Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000312 20 390 NP_758952 17 4312 NP_005679 17 4312 XP_005247116 17 4312 XP_005247115 17 4312 NP_071446 16 5631 NP_660300 16 7355 NP_001230175 15 9605 NP_061027 15 9605 NP_071751 15 9605 NP_001139761 15 9605 NP_055704 15 9605 NP_001229236 15 9605 XP_006721490 15 9605 XP_006721489 15 9605 XP_006721488 15 9605 XP_005256485 15 9605 XP_006721487 15 9605 XP_006721486 15 9605 XP_005256484 15 9605 XP_006717425 15 9605 XP_005252402 15 9605 NP_060607 15 9605>NP_000312 Length = 928 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RYKLGVRL 9 RYKLGVRL Sbjct: 445 RYKLGVRL 452>NP_758952 Length = 1137 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RYKLGV 7 RYKLGV Sbjct: 546 RYKLGV 551>NP_005679 Length = 1437 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRYKLGVRL 9 L Y+ GVRL Sbjct: 242 LNYRTGVRL 250>XP_005247116 Length = 1437 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRYKLGVRL 9 L Y+ GVRL Sbjct: 242 LNYRTGVRL 250>XP_005247115 Length = 1437 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRYKLGVRL 9 L Y+ GVRL Sbjct: 242 LNYRTGVRL 250>NP_071446 Length = 279 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRYKLGVRL 9 L++KLG R+ Sbjct: 129 LQFKLGARI 137>NP_660300 Length = 270 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRYKLGVRL 9 L Y+LG RL Sbjct: 31 LHYRLGRRL 39>NP_001230175 Length = 804 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 YKLGVRL 9 ++LGVRL Sbjct: 209 FRLGVRL 215>NP_061027 Length = 4599 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 YKLGVR 8 YKLGV+ Sbjct: 2634 YKLGVK 2639>NP_071751 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 YKLGVRL 9 ++LGVRL Sbjct: 209 FRLGVRL 215>NP_001139761 Length = 697 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 YKLGVRL 9 ++LGVRL Sbjct: 209 FRLGVRL 215>NP_055704 Length = 1037 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRYKLGVRL 9 L+YKLG ++ Sbjct: 38 LQYKLGDKI 46>NP_001229236 Length = 1038 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRYKLGVRL 9 L+YKLG ++ Sbjct: 38 LQYKLGDKI 46>XP_006721490 Length = 2036 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 1921 LRYTSGVR 1928>XP_006721489 Length = 2045 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 1930 LRYTSGVR 1937>XP_006721488 Length = 2056 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 1941 LRYTSGVR 1948>XP_005256485 Length = 2080 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 1965 LRYTSGVR 1972>XP_006721487 Length = 2111 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 1996 LRYTSGVR 2003>XP_006721486 Length = 2114 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 1999 LRYTSGVR 2006>XP_005256484 Length = 2115 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LRYKLGVR 8 LRY GVR Sbjct: 2000 LRYTSGVR 2007>XP_006717425 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRYKLGVRL 9 L+YKLG ++ Sbjct: 38 LQYKLGDKI 46>XP_005252402 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRYKLGVRL 9 L+YKLG ++ Sbjct: 38 LQYKLGDKI 46>NP_060607 Length = 375 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LRYKLG 6 LRYK+G Sbjct: 357 LRYKVG 362Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.161 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 491,757 Number of extensions: 718 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |