Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 19 869 NP_001207417 16 5631 XP_006721183 16 5631 NP_001248 16 5631 NP_001207419 16 5631 NP_001207418 16 5631 NP_001137472 16 7355 NP_001073936 16 7355 NP_001177739 16 7355 NP_060358 16 7355 XP_006721119 16 7355 XP_006721118 16 7355 NP_597704 16 7355 NP_116206 15 9605 NP_085046 15 9605 NP_001103444 15 9605 NP_001159681 15 9605 NP_001159680 15 9605 NP_009217 15 9605 XP_005268428 15 9605 XP_005268427 15 9605 XP_005268426 15 9605 XP_006714818 15 9605>NP_004295 Length = 1620 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 LRTSTIM D Sbjct: 1083 LRTSTIMTD 1091>NP_001207417 Length = 760 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSTIMID 9 T+TIMID Sbjct: 395 TATIMID 401>XP_006721183 Length = 422 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSTIMID 9 T+TIMID Sbjct: 348 TATIMID 354>NP_001248 Length = 713 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSTIMID 9 T+TIMID Sbjct: 348 TATIMID 354>NP_001207419 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSTIMID 9 T+TIMID Sbjct: 94 TATIMID 100>NP_001207418 Length = 674 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSTIMID 9 T+TIMID Sbjct: 309 TATIMID 315>NP_001137472 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LRTSTIMI 8 LRTSTI + Sbjct: 333 LRTSTIKV 340>NP_001073936 Length = 1848 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RTSTIMI 8 RT+TIMI Sbjct: 765 RTATIMI 771>NP_001177739 Length = 658 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LRTSTIMI 8 LRTSTI + Sbjct: 333 LRTSTIKV 340>NP_060358 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRTSTIMI 8 +RT T+MI Sbjct: 136 MRTGTVMI 143>XP_006721119 Length = 582 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRTSTIMI 8 +RT T+MI Sbjct: 136 MRTGTVMI 143>XP_006721118 Length = 582 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRTSTIMI 8 +RT T+MI Sbjct: 136 MRTGTVMI 143>NP_597704 Length = 550 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LRTSTIMI 8 LRTSTI + Sbjct: 172 LRTSTIKV 179>NP_116206 Length = 728 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 LRT TI+I+ Sbjct: 527 LRTITILIN 535>NP_085046 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 LRT TI+I+ Sbjct: 741 LRTITILIN 749>NP_001103444 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 150 VRCSTLLID 158>NP_001159681 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 394 VRCSTLLID 402>NP_001159680 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 394 VRCSTLLID 402>NP_009217 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 150 VRCSTLLID 158>XP_005268428 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 150 VRCSTLLID 158>XP_005268427 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 150 VRCSTLLID 158>XP_005268426 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 150 VRCSTLLID 158>XP_006714818 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRTSTIMID 9 +R ST++ID Sbjct: 394 VRCSTLLID 402Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.137 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 258,350 Number of extensions: 303 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |