Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1135 NP_001070949 16 5631 NP_001070948 16 5631 NP_001070947 16 5631 NP_001070937 16 5631 NP_001070942 16 5631 NP_001070946 16 5631 NP_001070938 16 5631 NP_001070945 16 5631 NP_001070941 16 5631 NP_001070943 16 5631 NP_001070940 16 5631 NP_001070950 16 5631 NP_001070944 16 5631 NP_001070939 16 5631 NP_005113 16 5631 NP_071436 16 5631 XP_005245754 16 5631 XP_005245751 16 5631 XP_005245750 16 5631 NP_056197 16 7355 NP_588614 16 7355 NP_073744 16 7355 NP_001030611 16 7355 NP_001003941 16 7355 XP_005267560 16 7355 XP_005267559 16 7355 XP_005252192 16 7355 NP_060842 15 9605 NP_001006946 15 9605 NP_001171940 15 9605 NP_689512 15 9605 NP_055366 15 9605 NP_006026 15 9605 XP_005261969 15 9605 XP_005268287 15 9605 XP_005268286 15 9605 XP_005268285 15 9605 XP_005268284 15 9605 XP_005272378 15 9605 XP_005271086 15 9605 NP_038460 15 9605>NP_004295 Length = 1620 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LRRAKQLV 8 LRRAKQLV Sbjct: 135 LRRAKQLV 142>NP_001070949 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_001070948 Length = 352 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_001070947 Length = 319 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070937 Length = 340 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_001070942 Length = 296 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_001070946 Length = 339 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_001070938 Length = 280 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070945 Length = 306 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070941 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070943 Length = 267 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070940 Length = 324 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070950 Length = 357 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_001070944 Length = 311 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 60 LRRAKQAQR 68>NP_001070939 Length = 309 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_005113 Length = 348 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>NP_071436 Length = 311 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RRAKQLVR 9 RRA++LVR Sbjct: 225 RRAQELVR 232>XP_005245754 Length = 353 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 89 LRRAKQAQR 97>XP_005245751 Length = 424 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 161 LRRAKQAQR 169>XP_005245750 Length = 429 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRRAKQ R Sbjct: 161 LRRAKQAQR 169>NP_056197 Length = 2610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LRRAKQLVR 9 LRR ++LVR Sbjct: 1259 LRRQRRLVR 1267>NP_588614 Length = 789 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RRAKQLVR 9 R+AK+L+R Sbjct: 561 RKAKKLIR 568>NP_073744 Length = 746 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RRAKQLV 8 RRAKQ+V Sbjct: 617 RRAKQVV 623>NP_001030611 Length = 733 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RRAKQLV 8 RRAKQ+V Sbjct: 604 RRAKQVV 610>NP_001003941 Length = 427 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RRAKQLVR 9 RRA+Q+V+ Sbjct: 408 RRARQIVK 415>XP_005267560 Length = 2563 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LRRAKQLVR 9 LRR ++LVR Sbjct: 1259 LRRQRRLVR 1267>XP_005267559 Length = 2610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LRRAKQLVR 9 LRR ++LVR Sbjct: 1259 LRRQRRLVR 1267>XP_005252192 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RRAKQLV 8 RRAKQ+V Sbjct: 606 RRAKQVV 612>NP_060842 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRRAKQLVR 9 +RR KQ++R Sbjct: 745 IRRLKQVLR 753>NP_001006946 Length = 233 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRRAKQLVR 9 +RR KQ++R Sbjct: 209 IRRLKQVLR 217>NP_001171940 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RRAKQL 7 RRAKQL Sbjct: 89 RRAKQL 94>NP_689512 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RRAKQL 7 RRAKQL Sbjct: 89 RRAKQL 94>NP_055366 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RRAKQL 7 RRAKQL Sbjct: 89 RRAKQL 94>NP_006026 Length = 1711 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RAKQLVR 9 RAKQLV+ Sbjct: 888 RAKQLVQ 894>XP_005261969 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RRAKQL 7 RRAKQL Sbjct: 62 RRAKQL 67>XP_005268287 Length = 1490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RAKQLVR 9 RAKQLV+ Sbjct: 888 RAKQLVQ 894>XP_005268286 Length = 1685 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RAKQLVR 9 RAKQLV+ Sbjct: 888 RAKQLVQ 894>XP_005268285 Length = 1702 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RAKQLVR 9 RAKQLV+ Sbjct: 888 RAKQLVQ 894>XP_005268284 Length = 1728 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RAKQLVR 9 RAKQLV+ Sbjct: 888 RAKQLVQ 894>XP_005272378 Length = 1377 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRR + LVR Sbjct: 542 LRRVQDLVR 550>XP_005271086 Length = 768 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LRRAKQLVR 9 +RR KQ++R Sbjct: 744 IRRLKQVLR 752>NP_038460 Length = 1378 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRRAKQLVR 9 LRR + LVR Sbjct: 542 LRRVQDLVR 550Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.342 0.145 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,926 Number of extensions: 551 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |