Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_689824 16 7355 XP_005255358 16 7355 XP_005255356 16 7355 XP_005255355 16 7355 NP_001138483 16 7355 NP_055833 15 9605 NP_001186871 15 9605 NP_055843 15 9605 NP_085150 15 9605 NP_001155038 15 9605 NP_001155037 15 9605 NP_001155036 15 9605 NP_001155035 15 9605 NP_001155034 15 9605 NP_001155033 15 9605 NP_001155032 15 9605 XP_005257331 15 9605 XP_006715462 15 9605 XP_006715461 15 9605 XP_006715460 15 9605 XP_006715459 15 9605 XP_006715458 15 9605 XP_006715457 15 9605 XP_006715456 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LRAIFTSEI 9 LR IFTSEI Sbjct: 2939 LRGIFTSEI 2947>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LRAIFTSEI 9 LR IFTSEI Sbjct: 2939 LRGIFTSEI 2947>NP_689824 Length = 740 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LRAIFTSEI 9 LRA+ TSE+ Sbjct: 87 LRALSTSEL 95>XP_005255358 Length = 1086 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSEI Sbjct: 227 AMFTSEI 233>XP_005255356 Length = 1114 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSEI Sbjct: 200 AMFTSEI 206>XP_005255355 Length = 1121 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSEI Sbjct: 227 AMFTSEI 233>NP_001138483 Length = 1141 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSEI Sbjct: 227 AMFTSEI 233>NP_055833 Length = 2465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2184 AIFSSEI 2190>NP_001186871 Length = 2476 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2175 AIFSSEI 2181>NP_055843 Length = 1360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 1000 ALFTSEL 1006>NP_085150 Length = 941 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LRAIFTSE 8 L++IFT+E Sbjct: 672 LKSIFTTE 679>NP_001155038 Length = 1268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 908 ALFTSEL 914>NP_001155037 Length = 1276 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 916 ALFTSEL 922>NP_001155036 Length = 1297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 937 ALFTSEL 943>NP_001155035 Length = 1305 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 945 ALFTSEL 951>NP_001155034 Length = 1323 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 963 ALFTSEL 969>NP_001155033 Length = 1331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 971 ALFTSEL 977>NP_001155032 Length = 1352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 A+FTSE+ Sbjct: 992 ALFTSEL 998>XP_005257331 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LRAIFTS 7 +RA+FTS Sbjct: 10 IRALFTS 16>XP_006715462 Length = 2452 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2151 AIFSSEI 2157>XP_006715461 Length = 2456 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2175 AIFSSEI 2181>XP_006715460 Length = 2465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2184 AIFSSEI 2190>XP_006715459 Length = 2475 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2174 AIFSSEI 2180>XP_006715458 Length = 2476 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2175 AIFSSEI 2181>XP_006715457 Length = 2485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2184 AIFSSEI 2190>XP_006715456 Length = 2485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AIFTSEI 9 AIF+SEI Sbjct: 2184 AIFSSEI 2190Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.144 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 310,609 Number of extensions: 380 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |