Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 390 XP_006716142 20 390 XP_005250088 20 390 XP_006716141 20 390 XP_005250085 20 390 XP_006716140 20 390 XP_005250084 20 390 XP_005250083 20 390 XP_005250082 20 390 NP_742093 18 1935 NP_001269238 18 1935 NP_001269239 18 1935 NP_473361 18 1935 NP_001004298 17 2528 NP_542389 17 2528 XP_005269549 17 2528 XP_005269548 17 2528 NP_001610 17 3301 NP_001193731 17 4312 NP_004872 17 4312 NP_671713 17 4312 NP_005151 17 4312 XP_006724221 17 4312 XP_006712213 17 4312 NP_003981 16 5631 NP_003980 16 5631 NP_000269 16 5631 NP_003978 16 5631 NP_003979 16 5631 NP_065777 16 7355 NP_689648 16 7355 XP_006714724 16 7355 XP_005248616 16 7355 NP_775321 15 9605 NP_001106649 15 9605 NP_619728 15 9605 NP_006590 15 9605 NP_619727 15 9605 NP_775322 15 9605 NP_008860 15 9605 NP_005473 15 9605 XP_006725560 15 9605 XP_005255834 15 9605 XP_006721188 15 9605 XP_006715231 15 9605>NP_733751 Length = 4911 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2013 RADVFQRQ 2020>XP_006716142 Length = 4927 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>XP_005250088 Length = 4928 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>XP_006716141 Length = 4959 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>XP_005250085 Length = 4979 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>XP_006716140 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>XP_005250084 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>XP_005250083 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2029 RADVFQRQ 2036>XP_005250082 Length = 4983 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RADVFQRQ 9 RADVFQRQ Sbjct: 2030 RADVFQRQ 2037>NP_742093 Length = 530 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 L+AD+F+RQ Sbjct: 362 LKADMFKRQ 370>NP_001269238 Length = 528 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 L+AD+F+RQ Sbjct: 362 LKADMFKRQ 370>NP_001269239 Length = 534 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 L+AD+F+RQ Sbjct: 368 LKADMFKRQ 376>NP_473361 Length = 528 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 L+AD+F+RQ Sbjct: 362 LKADMFKRQ 370>NP_001004298 Length = 699 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 LRA+VF++Q Sbjct: 680 LRAEVFKKQ 688>NP_542389 Length = 319 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 LRAD+F R Sbjct: 187 LRADIFSR 194>XP_005269549 Length = 292 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 LRA+VF++Q Sbjct: 273 LRAEVFKKQ 281>XP_005269548 Length = 738 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LRADVFQRQ 9 LRA+VF++Q Sbjct: 719 LRAEVFKKQ 727>NP_001610 Length = 689 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 LR DVFQ+ Sbjct: 157 LRGDVFQK 164>NP_001193731 Length = 248 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RADVFQRQ 9 RAD+ QRQ Sbjct: 41 RADLMQRQ 48>NP_004872 Length = 332 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RADVFQRQ 9 RAD+ QRQ Sbjct: 41 RADLMQRQ 48>NP_671713 Length = 332 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RADVFQRQ 9 RAD+ QRQ Sbjct: 41 RADLMQRQ 48>NP_005151 Length = 688 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 LR D+FQ+ Sbjct: 157 LRGDIFQK 164>XP_006724221 Length = 575 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 LR D+FQ+ Sbjct: 44 LRGDIFQK 51>XP_006712213 Length = 248 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RADVFQRQ 9 RAD+ QRQ Sbjct: 41 RADLMQRQ 48>NP_003981 Length = 431 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRADVFQRQ 9 LRAD F +Q Sbjct: 251 LRADTFTQQ 259>NP_003980 Length = 408 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRADVFQRQ 9 LRAD F +Q Sbjct: 228 LRADTFTQQ 236>NP_000269 Length = 393 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRADVFQRQ 9 LRAD F +Q Sbjct: 228 LRADTFTQQ 236>NP_003978 Length = 416 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRADVFQRQ 9 LRAD F +Q Sbjct: 251 LRADTFTQQ 259>NP_003979 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LRADVFQRQ 9 LRAD F +Q Sbjct: 228 LRADTFTQQ 236>NP_065777 Length = 704 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 +R D+F+R Sbjct: 138 MRGDIFER 145>NP_689648 Length = 426 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ADVFQRQ 9 ADV QRQ Sbjct: 56 ADVIQRQ 62>XP_006714724 Length = 681 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 +R D+F+R Sbjct: 115 MRGDIFER 122>XP_005248616 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 +R D+F+R Sbjct: 138 MRGDIFER 145>NP_775321 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 750 LSADIFQQ 757>NP_001106649 Length = 1548 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 843 LSADIFQQ 850>NP_619728 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 750 LSADIFQQ 757>NP_006590 Length = 1531 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 826 LSADIFQQ 833>NP_619727 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 844 LSADIFQQ 851>NP_775322 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 750 LSADIFQQ 757>NP_008860 Length = 1246 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 DVFQRQ 9 DVFQ+Q Sbjct: 312 DVFQKQ 317>NP_005473 Length = 395 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 RADVFQR 8 R D+FQR Sbjct: 287 RTDLFQR 293>XP_006725560 Length = 1031 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 DVFQRQ 9 DVFQ+Q Sbjct: 312 DVFQKQ 317>XP_005255834 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 559 LSADIFQQ 566>XP_006721188 Length = 1484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LRADVFQR 8 L AD+FQ+ Sbjct: 779 LSADIFQQ 786>XP_006715231 Length = 1031 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 DVFQRQ 9 DVFQ+Q Sbjct: 312 DVFQKQ 317Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.144 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 414,719 Number of extensions: 704 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |