Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 19 665 NP_996844 19 869 XP_005254439 19 869 XP_006720568 19 869 XP_005254438 19 869 NP_002335 19 869 NP_000072 18 1135 XP_005273087 18 1135 XP_005273086 18 1135 XP_005273085 18 1135 XP_005273084 18 1135 NP_001274103 16 5631 NP_000343 16 5631 XP_006718349 16 5631 NP_005237 16 7355 NP_001157865 16 7355 NP_031384 16 7355 NP_001157864 16 7355 NP_001157863 16 7355 NP_055580 16 7355 NP_006851 16 7355 NP_001171172 16 7355 NP_071373 16 7355 XP_006724169 16 7355 XP_005266015 16 7355 XP_005271980 16 7355 XP_006714636 16 7355 XP_006714635 16 7355 NP_056110 15 9605 XP_005258159 15 9605 XP_006722384 15 9605>NP_004295 Length = 1620 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV VKTLP Sbjct: 1145 LQVAVKTLP 1153>NP_996844 Length = 803 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV +KTLP Sbjct: 478 LQVAIKTLP 486>XP_005254439 Length = 475 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV +KTLP Sbjct: 150 LQVAIKTLP 158>XP_006720568 Length = 771 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV +KTLP Sbjct: 446 LQVAIKTLP 454>XP_005254438 Length = 819 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV +KTLP Sbjct: 494 LQVAIKTLP 502>NP_002335 Length = 864 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV +KTLP Sbjct: 539 LQVAIKTLP 547>NP_000072 Length = 3801 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQ+ VKTLP Sbjct: 774 LQIYVKTLP 782>XP_005273087 Length = 2788 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQ+ VKTLP Sbjct: 774 LQIYVKTLP 782>XP_005273086 Length = 3264 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQ+ VKTLP Sbjct: 774 LQIYVKTLP 782>XP_005273085 Length = 3755 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQ+ VKTLP Sbjct: 774 LQIYVKTLP 782>XP_005273084 Length = 3801 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQ+ VKTLP Sbjct: 774 LQIYVKTLP 782>NP_001274103 Length = 1582 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 L++VVK LP Sbjct: 1460 LKLVVKALP 1468>NP_000343 Length = 1581 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 L++VVK LP Sbjct: 1459 LKLVVKALP 1467>XP_006718349 Length = 1646 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 L++VVK LP Sbjct: 1524 LKLVVKALP 1532>NP_005237 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LQVVVKTL 8 LQV++KTL Sbjct: 305 LQVMLKTL 312>NP_001157865 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV+ +TLP Sbjct: 73 LQVMKQTLP 81>NP_031384 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV+ +TLP Sbjct: 175 LQVMKQTLP 183>NP_001157864 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV+ +TLP Sbjct: 175 LQVMKQTLP 183>NP_001157863 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV+ +TLP Sbjct: 73 LQVMKQTLP 81>NP_055580 Length = 145 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 LQV+ +TLP Sbjct: 107 LQVLQQTLP 115>NP_006851 Length = 185 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 + +VVKT+P Sbjct: 41 MDLVVKTVP 49>NP_001171172 Length = 186 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 + +VVKT+P Sbjct: 42 MDLVVKTVP 50>NP_071373 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VVVKTLP 9 +V+KTLP Sbjct: 278 LVIKTLP 284>XP_006724169 Length = 186 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQVVVKTLP 9 + +VVKT+P Sbjct: 42 MDLVVKTVP 50>XP_005266015 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VVVKTLP 9 +V+KTLP Sbjct: 278 LVIKTLP 284>XP_005271980 Length = 749 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LQVVVKTL 8 LQV++KTL Sbjct: 232 LQVMLKTL 239>XP_006714636 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LQVVVKTL 8 LQV++KTL Sbjct: 305 LQVMLKTL 312>XP_006714635 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LQVVVKTL 8 LQV++KTL Sbjct: 305 LQVMLKTL 312>NP_056110 Length = 2005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QVVVKTLP 9 QV+V+ LP Sbjct: 1478 QVIVEVLP 1485>XP_005258159 Length = 1817 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QVVVKTLP 9 QV+V+ LP Sbjct: 1290 QVIVEVLP 1297>XP_006722384 Length = 1877 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QVVVKTLP 9 QV+V+ LP Sbjct: 1350 QVIVEVLP 1357Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.140 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 355,047 Number of extensions: 493 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |