Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 390 XP_005262424 20 390 NP_001399 17 2528 XP_006710468 17 2528 XP_005270637 17 2528 NP_694950 17 4312 NP_001121775 17 4312 XP_006719830 17 4312 XP_006719829 17 4312 XP_005266318 17 4312 XP_006717199 17 4312 NP_003051 16 7355 NP_036214 16 7355 NP_002408 16 7355 NP_001139438 16 7355 XP_006717927 16 7355 XP_006714739 16 7355 XP_005272112 16 7355 NP_001273983 15 9605 NP_005156 15 9605 NP_003430 15 9605 XP_005258006 15 9605 XP_005258004 15 9605 XP_005250622 15 9605 XP_006716175 15 9605>NP_722576 Length = 3080 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LPRESAMAT 9 LPRES+MAT Sbjct: 1498 LPRESSMAT 1506>XP_005262424 Length = 2875 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LPRESAMAT 9 LPRES+MAT Sbjct: 1293 LPRESSMAT 1301>NP_001399 Length = 2923 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LPRESAMAT 9 +PR SA+AT Sbjct: 266 MPRRSALAT 274>XP_006710468 Length = 2916 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LPRESAMAT 9 +PR SA+AT Sbjct: 266 MPRRSALAT 274>XP_005270637 Length = 2921 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LPRESAMAT 9 +PR SA+AT Sbjct: 266 MPRRSALAT 274>NP_694950 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LPRESAMA 8 LPRESA A Sbjct: 345 LPRESAEA 352>NP_001121775 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LPRESAMA 8 LPRESA A Sbjct: 345 LPRESAEA 352>XP_006719830 Length = 428 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LPRESAMA 8 LPRESA A Sbjct: 345 LPRESAEA 352>XP_006719829 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LPRESAMA 8 LPRESA A Sbjct: 345 LPRESAEA 352>XP_005266318 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LPRESAMA 8 LPRESA A Sbjct: 345 LPRESAEA 352>XP_006717199 Length = 319 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LPRESAMAT 9 LPR AMAT Sbjct: 18 LPRVPAMAT 26>NP_003051 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LPRESAMAT 9 LPR +MAT Sbjct: 397 LPRRYSMAT 405>NP_036214 Length = 1151 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LPRESAMAT 9 LP+++AMA+ Sbjct: 230 LPQQAAMAS 238>NP_002408 Length = 3256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PRESAMA 8 PRESA A Sbjct: 2790 PRESAQA 2796>NP_001139438 Length = 2896 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PRESAMA 8 PRESA A Sbjct: 2430 PRESAQA 2436>XP_006717927 Length = 2406 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PRESAMA 8 PRESA A Sbjct: 1940 PRESAQA 1946>XP_006714739 Length = 353 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LPRESAMAT 9 LPR +MAT Sbjct: 193 LPRRYSMAT 201>XP_005272112 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LPRESAMAT 9 LPR +MAT Sbjct: 421 LPRRYSMAT 429>NP_001273983 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PRESAMAT 9 PR+ AMA+ Sbjct: 173 PRDQAMAS 180>NP_005156 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PRESAMAT 9 P E AMAT Sbjct: 246 PEEIAMAT 253>NP_003430 Length = 563 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PRESAMAT 9 PR+ AMA+ Sbjct: 209 PRDQAMAS 216>XP_005258006 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PRESAMAT 9 P E AMAT Sbjct: 246 PEEIAMAT 253>XP_005258004 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PRESAMAT 9 P E AMAT Sbjct: 333 PEEIAMAT 340>XP_005250622 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PRESAMAT 9 PR+ AMA+ Sbjct: 209 PRDQAMAS 216>XP_006716175 Length = 563 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PRESAMAT 9 PR+ AMA+ Sbjct: 209 PRDQAMAS 216Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.114 0.295 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 455,647 Number of extensions: 329 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |