Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 20 299 NP_000706 17 3301 XP_005273308 17 3301 XP_005273309 17 3301 NP_653267 17 4312 NP_065845 17 4312 XP_006710845 17 4312 NP_061029 16 7355 NP_057043 16 7355 NP_075462 16 7355 NP_001166281 16 7355 NP_001137484 16 7355 XP_006723289 16 7355 XP_005257635 16 7355 XP_005266501 16 7355 XP_005266500 16 7355 NP_001175 15 9605 NP_001265473 15 9605 NP_000057 15 9605 NP_055736 15 9605 NP_068817 15 9605 NP_001265472 15 9605 NP_001008701 15 9605 NP_001239160 15 9605 XP_005259876 15 9605 XP_006722752 15 9605 XP_005259875 15 9605 XP_006722751 15 9605 XP_005271911 15 9605 XP_006714586 15 9605 XP_005271223 15 9605 XP_006710936 15 9605>NP_004351 Length = 882 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LNTRFKVGT 9 L+TRFKVGT Sbjct: 71 LDTRFKVGT 79>NP_000706 Length = 597 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TRFKVGT 9 TRFK GT Sbjct: 69 TRFKTGT 75>XP_005273308 Length = 597 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TRFKVGT 9 TRFK GT Sbjct: 69 TRFKTGT 75>XP_005273309 Length = 597 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TRFKVGT 9 TRFK GT Sbjct: 69 TRFKTGT 75>NP_653267 Length = 4753 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LNTRFKV 7 LN+RFKV Sbjct: 1284 LNSRFKV 1290>NP_065845 Length = 1537 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NTRFKVGT 9 NTR KVG+ Sbjct: 701 NTRVKVGS 708>XP_006710845 Length = 1492 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NTRFKVGT 9 NTR KVG+ Sbjct: 656 NTRVKVGS 663>NP_061029 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LNTRFKVG 8 LNTRF G Sbjct: 327 LNTRFSHG 334>NP_057043 Length = 296 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNTRFKVGT 9 ++TR+KV T Sbjct: 202 VSTRYKVST 210>NP_075462 Length = 605 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LNTRFKVGT 9 L T+F VGT Sbjct: 329 LPTKFMVGT 337>NP_001166281 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LNTRFKVGT 9 L T+F VGT Sbjct: 329 LPTKFMVGT 337>NP_001137484 Length = 258 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNTRFKVGT 9 ++TR+KV T Sbjct: 164 VSTRYKVST 172>XP_006723289 Length = 416 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LNTRFKVGT 9 + TRF GT Sbjct: 136 MGTRFSAGT 144>XP_005257635 Length = 605 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LNTRFKVGT 9 L T+F VGT Sbjct: 329 LPTKFMVGT 337>XP_005266501 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LNTRFKVG 8 LNTRF G Sbjct: 327 LNTRFSHG 334>XP_005266500 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LNTRFKVG 8 LNTRF G Sbjct: 327 LNTRFSHG 334>NP_001175 Length = 2644 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNTRFK 6 LNTR+K Sbjct: 1458 LNTRYK 1463>NP_001265473 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNTRFK 6 LNTRF+ Sbjct: 144 LNTRFR 149>NP_000057 Length = 591 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNTRFK 6 LNTRF+ Sbjct: 206 LNTRFR 211>NP_055736 Length = 1469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NTRFKVGT 9 NTR+ GT Sbjct: 1133 NTRYYTGT 1140>NP_068817 Length = 1093 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NTRFKVG 8 NTR K+G Sbjct: 539 NTRTKIG 545>NP_001265472 Length = 539 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNTRFK 6 LNTRF+ Sbjct: 154 LNTRFR 159>NP_001008701 Length = 1474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NTRFKVGT 9 NTR+ GT Sbjct: 1138 NTRYYTGT 1145>NP_001239160 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NTRFKVG 8 NTR K+G Sbjct: 539 NTRTKIG 545>XP_005259876 Length = 1498 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NTRFKVGT 9 NTR+ GT Sbjct: 1138 NTRYYTGT 1145>XP_006722752 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NTRFKVGT 9 NTR+ GT Sbjct: 1102 NTRYYTGT 1109>XP_005259875 Length = 1493 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NTRFKVGT 9 NTR+ GT Sbjct: 1133 NTRYYTGT 1140>XP_006722751 Length = 1498 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NTRFKVGT 9 NTR+ GT Sbjct: 1138 NTRYYTGT 1145>XP_005271911 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NTRFKVG 8 NTR K+G Sbjct: 539 NTRTKIG 545>XP_006714586 Length = 1035 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NTRFKVG 8 NTR K+G Sbjct: 481 NTRTKIG 487>XP_005271223 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNTRFK 6 LNTRF+ Sbjct: 243 LNTRFR 248>XP_006710936 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNTRFK 6 LNTRF+ Sbjct: 245 LNTRFR 250Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 386,638 Number of extensions: 519 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |