Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275685 17 3301 NP_001028721 17 3301 NP_054892 17 3301 NP_112217 17 3301 NP_477512 17 4312 XP_005260209 17 4312 NP_005227 16 7355 NP_001271230 15 9605 NP_149985 15 9605 NP_001271231 15 9605 NP_061155 15 9605 NP_848627 15 9605 NP_001107033 15 9605 XP_006715810 15 9605 XP_006715809 15 9605 XP_006714654 15 9605 XP_006714653 15 9605 XP_006714652 15 9605>NP_001275685 Length = 329 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LNISQKM 7 LN+SQKM Sbjct: 121 LNVSQKM 127>NP_001028721 Length = 329 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LNISQKM 7 LN+SQKM Sbjct: 121 LNVSQKM 127>NP_054892 Length = 329 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LNISQKM 7 LN+SQKM Sbjct: 121 LNVSQKM 127>NP_112217 Length = 1594 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 +NISQK E+ Sbjct: 214 VNISQKQEL 222>NP_477512 Length = 454 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NISQKMEI 9 N+SQ ME+ Sbjct: 74 NVSQSMEV 81>XP_005260209 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NISQKMEI 9 N+SQ ME+ Sbjct: 98 NVSQSMEV 105>NP_005227 Length = 916 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ISQKMEI 9 IS+KMEI Sbjct: 357 ISEKMEI 363>NP_001271230 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LNISQKME 8 +NI QKM+ Sbjct: 677 VNIKQKMQ 684>NP_149985 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 LN+ +KM++ Sbjct: 10 LNLEEKMKV 18>NP_001271231 Length = 1086 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LNISQKME 8 +NI QKM+ Sbjct: 676 VNIKQKMQ 683>NP_061155 Length = 1124 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LNISQKME 8 +NI QKM+ Sbjct: 714 VNIKQKMQ 721>NP_848627 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 LNIS+K+ + Sbjct: 233 LNISEKLTL 241>NP_001107033 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 LNIS+K+ + Sbjct: 233 LNISEKLTL 241>XP_006715810 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LNISQKME 8 +NI QKM+ Sbjct: 677 VNIKQKMQ 684>XP_006715809 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LNISQKME 8 +NI QKM+ Sbjct: 714 VNIKQKMQ 721>XP_006714654 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 LNIS+K+ + Sbjct: 233 LNISEKLTL 241>XP_006714653 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 LNIS+K+ + Sbjct: 233 LNISEKLTL 241>XP_006714652 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNISQKMEI 9 LNIS+K+ + Sbjct: 233 LNISEKLTL 241Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.129 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 370,616 Number of extensions: 464 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |