Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 17 2528 NP_001035957 17 2528 XP_006721991 17 2528 XP_006721990 17 2528 XP_006721989 17 2528 XP_005258041 17 2528 XP_006721988 17 2528 XP_006721987 17 2528 XP_006721986 17 2528 XP_005258040 17 2528 XP_006721985 17 2528 NP_079229 17 4312 XP_005253995 17 4312 XP_006719669 17 4312>NP_000258 Length = 2818 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1420 LMSKILQSI 1428>NP_001035957 Length = 2839 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1441 LMSKILQSI 1449>XP_006721991 Length = 1632 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1451 LMSKILQSI 1459>XP_006721990 Length = 2823 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1451 LMSKILQSI 1459>XP_006721989 Length = 2823 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1451 LMSKILQSI 1459>XP_005258041 Length = 2836 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1420 LMSKILQSI 1428>XP_006721988 Length = 2846 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1430 LMSKILQSI 1438>XP_006721987 Length = 2849 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1451 LMSKILQSI 1459>XP_006721986 Length = 2854 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1438 LMSKILQSI 1446>XP_005258040 Length = 2857 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1441 LMSKILQSI 1449>XP_006721985 Length = 2867 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMSMILQSI 9 LMS ILQSI Sbjct: 1451 LMSKILQSI 1459>NP_079229 Length = 972 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSMILQSI 9 +MS+I+QSI Sbjct: 153 VMSLIMQSI 161>XP_005253995 Length = 836 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSMILQSI 9 +MS+I+QSI Sbjct: 17 VMSLIMQSI 25>XP_006719669 Length = 944 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSMILQSI 9 +MS+I+QSI Sbjct: 125 VMSLIMQSI 133Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.141 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 193,325 Number of extensions: 92 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |