Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 18 1482 NP_001087241 18 1482 XP_005265799 18 1482 XP_005265798 18 1482 XP_005265797 18 1482 NP_005202 17 3301 NP_002600 17 3301 NP_001275634 17 3301 XP_005268521 17 3301 NP_002011 16 5631 NP_891555 16 5631 NP_002244 16 5631 NP_079003 16 5631 NP_001264056 16 5631 NP_005859 16 5631 NP_006197 16 7355 NP_056054 16 7355 NP_057646 16 7355 NP_001012977 16 7355 NP_001012975 16 7355 NP_001158016 16 7355 NP_001158014 16 7355 NP_001158013 16 7355 NP_001158012 16 7355 NP_001158011 16 7355 NP_001158010 16 7355 NP_061132 16 7355 NP_001158009 16 7355 XP_005251905 16 7355 XP_005251904 16 7355 XP_006714104 16 7355 XP_005265800 16 7355 XP_006714103 16 7355 XP_006714102 16 7355 NP_061735 16 7355 NP_114382 16 7355 NP_002733 15 9605 NP_002431 15 9605 XP_005267916 15 9605 XP_006718567 15 9605 NP_001032302 15 9605>NP_000213 Length = 976 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LKVLS Sbjct: 637 LMSELKVLS 645>NP_001087241 Length = 972 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LKVLS Sbjct: 633 LMSELKVLS 641>XP_005265799 Length = 973 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LKVLS Sbjct: 634 LMSELKVLS 642>XP_005265798 Length = 976 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LKVLS Sbjct: 638 LMSELKVLS 646>XP_005265797 Length = 977 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LKVLS Sbjct: 638 LMSELKVLS 646>NP_005202 Length = 972 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK++S Sbjct: 630 LMSELKIMS 638>NP_002600 Length = 1106 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK++S Sbjct: 648 LMSELKIMS 656>NP_001275634 Length = 972 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK++S Sbjct: 630 LMSELKIMS 638>XP_005268521 Length = 1042 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK++S Sbjct: 584 LMSELKIMS 592>NP_002011 Length = 1298 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 LMS+LK+L Sbjct: 893 LMSELKIL 900>NP_891555 Length = 1363 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 LMS+LK+L Sbjct: 893 LMSELKIL 900>NP_002244 Length = 1356 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 LMS+LK+L Sbjct: 882 LMSELKIL 889>NP_079003 Length = 552 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 L+SKLK+L Sbjct: 140 LVSKLKIL 147>NP_001264056 Length = 443 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 L+SKLK+L Sbjct: 140 LVSKLKIL 147>NP_005859 Length = 118 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSKLKVLS 9 M KLK+LS Sbjct: 82 MGKLKILS 89>NP_006197 Length = 1089 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK+++ Sbjct: 641 LMSELKIMT 649>NP_056054 Length = 1186 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MSKLKVL 8 MSKLKV+ Sbjct: 1 MSKLKVI 7>NP_057646 Length = 1049 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MSKLKVLS 9 ++KLKVLS Sbjct: 203 LTKLKVLS 210>NP_001012977 Length = 678 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001012975 Length = 832 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001158016 Length = 662 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001158014 Length = 681 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001158013 Length = 695 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001158012 Length = 732 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 502 LLSKLLVLS 510>NP_001158011 Length = 755 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001158010 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_061132 Length = 854 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 624 LLSKLLVLS 632>NP_001158009 Length = 886 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 L+SKL VLS Sbjct: 656 LLSKLLVLS 664>XP_005251905 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MSKLKVL 8 MSKLKV+ Sbjct: 1 MSKLKVI 7>XP_005251904 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MSKLKVL 8 MSKLKV+ Sbjct: 1 MSKLKVI 7>XP_006714104 Length = 832 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK+++ Sbjct: 666 LMSELKIMT 674>XP_005265800 Length = 1089 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK+++ Sbjct: 641 LMSELKIMT 649>XP_006714103 Length = 1111 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK+++ Sbjct: 663 LMSELKIMT 671>XP_006714102 Length = 1114 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 LMS+LK+++ Sbjct: 666 LMSELKIMT 674>NP_061735 Length = 931 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 LM+K+KVL Sbjct: 327 LMAKVKVL 334>NP_114382 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LMSKLKVL 8 LM+K+KVL Sbjct: 327 LMAKVKVL 334>NP_002733 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMSKLKV 7 LMSK+KV Sbjct: 263 LMSKVKV 269>NP_002431 Length = 936 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LMSKLKVLS 9 +++KLK+LS Sbjct: 197 VITKLKILS 205>XP_005267916 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMSKLKV 7 LMSK+KV Sbjct: 271 LMSKVKV 277>XP_006718567 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 LMS+ K+LS Sbjct: 216 LMSRNKILS 224>NP_001032302 Length = 216 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LMSKLKVLS 9 LMS+ K+LS Sbjct: 177 LMSRNKILS 185Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.130 0.286 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 268,859 Number of extensions: 375 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |