Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 509 NP_671714 20 509 XP_006715890 20 509 XP_005250160 20 509 XP_005250159 20 509 NP_065813 17 3301 XP_005269099 17 3301 NP_068761 16 5631 NP_951008 16 5631 XP_005250110 16 5631 XP_005250109 16 5631 NP_003452 16 5631 NP_001010972 16 5631 NP_892006 16 7355 NP_149062 16 7355 XP_006715488 16 7355 XP_006715487 16 7355 XP_006715486 16 7355 XP_006715485 16 7355 XP_006715484 16 7355 XP_006715483 16 7355 XP_006715482 16 7355 XP_006715481 16 7355 XP_006715480 16 7355 XP_006715479 16 7355 XP_006715478 16 7355 XP_006715477 16 7355 XP_006715476 16 7355 XP_006715475 16 7355 XP_006715474 16 7355 XP_006715473 16 7355 XP_006715472 16 7355 XP_006715471 16 7355 XP_006715470 16 7355>NP_005742 Length = 3907 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMNVAMNEL 9 LMNVA+NEL Sbjct: 490 LMNVAINEL 498>NP_671714 Length = 3899 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMNVAMNEL 9 LMNVA+NEL Sbjct: 490 LMNVAINEL 498>XP_006715890 Length = 3860 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMNVAMNEL 9 LMNVA+NEL Sbjct: 490 LMNVAINEL 498>XP_005250160 Length = 3939 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMNVAMNEL 9 LMNVA+NEL Sbjct: 490 LMNVAINEL 498>XP_005250159 Length = 3952 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LMNVAMNEL 9 LMNVA+NEL Sbjct: 490 LMNVAINEL 498>NP_065813 Length = 1085 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MNVAMNEL 9 MN A+NEL Sbjct: 966 MNTALNEL 973>XP_005269099 Length = 1062 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MNVAMNEL 9 MN A+NEL Sbjct: 943 MNTALNEL 950>NP_068761 Length = 1133 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LMNVAMNE 8 L+NV MNE Sbjct: 538 LINVLMNE 545>NP_951008 Length = 1086 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LMNVAMNE 8 L+NV MNE Sbjct: 538 LINVLMNE 545>XP_005250110 Length = 631 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NVAMNEL 9 NVA+NEL Sbjct: 436 NVAVNEL 442>XP_005250109 Length = 632 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NVAMNEL 9 NVA+NEL Sbjct: 437 NVAVNEL 443>NP_003452 Length = 572 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NVAMNEL 9 NVA+NEL Sbjct: 377 NVAVNEL 383>NP_001010972 Length = 572 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NVAMNEL 9 NVA+NEL Sbjct: 377 NVAVNEL 383>NP_892006 Length = 8797 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2327 LMNCAQNE 2334>NP_149062 Length = 8749 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715488 Length = 8721 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715487 Length = 8744 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715486 Length = 8758 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715485 Length = 8793 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2281 LMNCAQNE 2288>XP_006715484 Length = 8794 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715483 Length = 8795 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715482 Length = 8797 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2327 LMNCAQNE 2334>XP_006715481 Length = 8799 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2287 LMNCAQNE 2294>XP_006715480 Length = 8799 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715479 Length = 8804 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715478 Length = 8809 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715477 Length = 8822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2310 LMNCAQNE 2317>XP_006715476 Length = 8823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715475 Length = 8827 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715474 Length = 8829 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2317 LMNCAQNE 2324>XP_006715473 Length = 8832 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715472 Length = 8839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2327 LMNCAQNE 2334>XP_006715471 Length = 8842 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341>XP_006715470 Length = 8846 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LMNVAMNE 8 LMN A NE Sbjct: 2334 LMNCAQNE 2341Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.128 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 273,764 Number of extensions: 452 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |