Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005381 16 5631 NP_065815 16 7355 XP_005255515 16 7355 NP_066357 15 9605 NP_000992 15 9605 NP_001186902 15 9605 NP_055787 15 9605>NP_005381 Length = 388 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LMLAIRRMK 9 +ML +RRM+ Sbjct: 65 MMLTVRRME 73>NP_065815 Length = 1431 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LMLAIRRM 8 LMLA+R++ Sbjct: 595 LMLAVRKL 602>XP_005255515 Length = 1360 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LMLAIRRM 8 LMLA+R++ Sbjct: 524 LMLAVRKL 531>NP_066357 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MLAIRRMK 9 MLAI+R K Sbjct: 118 MLAIKRCK 125>NP_000992 Length = 106 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MLAIRRMK 9 MLAI+R K Sbjct: 82 MLAIKRCK 89>NP_001186902 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MLAIRRMK 9 MLAI+R K Sbjct: 118 MLAIKRCK 125>NP_055787 Length = 676 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LMLAIRRM 8 LMLA+R M Sbjct: 645 LMLAVRDM 652Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.357 0.153 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 257,069 Number of extensions: 145 Number of successful extensions: 7 Number of sequences better than 10000.0: 7 Number of HSP's gapped: 7 Number of HSP's successfully gapped: 7 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |