Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 18 1135 NP_001091680 18 1135 NP_001091679 18 1135 XP_006713048 18 1135 XP_005264943 18 1135 NP_859070 17 2528 XP_005245884 17 2528 XP_005245882 17 2528 XP_006710614 17 2528 XP_005245881 17 2528 XP_005245880 17 2528 XP_006710613 17 2528 XP_005245879 17 2528 XP_006713047 17 3301 XP_006713046 17 3301 NP_001035232 16 5631 NP_066287 16 5631 NP_001035233 16 5631 XP_005246813 16 5631 XP_005246812 16 5631 XP_005246811 16 5631 XP_005246810 16 5631 XP_005246808 16 5631 XP_005246807 16 5631 NP_113656 16 7355 NP_001017440 16 7355 XP_006721061 16 7355 XP_006716209 16 7355 XP_006710064 16 7355 NP_003931 15 9605 NP_005384 15 9605 NP_001156729 15 9605 NP_001001794 15 9605 XP_005261972 15 9605 XP_005261971 15 9605>NP_001895 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMEL MAME Sbjct: 7 LMELDMAME 15>NP_001091680 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMEL MAME Sbjct: 7 LMELDMAME 15>NP_001091679 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMEL MAME Sbjct: 7 LMELDMAME 15>XP_006713048 Length = 720 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMEL MAME Sbjct: 7 LMELDMAME 15>XP_005264943 Length = 781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMEL MAME Sbjct: 7 LMELDMAME 15>NP_859070 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_005245884 Length = 594 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 278 LMELGNALE 286>XP_005245882 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_006710614 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_005245881 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_005245880 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_006710613 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_005245879 Length = 634 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LMELG A+E Sbjct: 318 LMELGNALE 326>XP_006713047 Length = 774 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MELGMAME 9 MEL MAME Sbjct: 1 MELDMAME 8>XP_006713046 Length = 774 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MELGMAME 9 MEL MAME Sbjct: 1 MELDMAME 8>NP_001035232 Length = 2005 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 835 LMELGLA 841>NP_066287 Length = 2005 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 835 LMELGLA 841>NP_001035233 Length = 2005 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 835 LMELGLA 841>XP_005246813 Length = 1271 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 101 LMELGLA 107>XP_005246812 Length = 1754 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 584 LMELGLA 590>XP_005246811 Length = 1995 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 825 LMELGLA 831>XP_005246810 Length = 2005 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 835 LMELGLA 841>XP_005246808 Length = 2005 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 835 LMELGLA 841>XP_005246807 Length = 2005 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LMELGMA 7 LMELG+A Sbjct: 835 LMELGLA 841>NP_113656 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ELGMAM 8 ELGMAM Sbjct: 102 ELGMAM 107>NP_001017440 Length = 219 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ELGMAM 8 ELGMAM Sbjct: 60 ELGMAM 65>XP_006721061 Length = 688 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 L+ELG+ +E Sbjct: 357 LLELGLRLE 365>XP_006716209 Length = 134 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ELGMAM 8 ELGMAM Sbjct: 60 ELGMAM 65>XP_006710064 Length = 688 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 L+ELG+ +E Sbjct: 357 LLELGLRLE 365>NP_003931 Length = 863 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 LM+L +AME Sbjct: 498 LMQLPVAME 506>NP_005384 Length = 1909 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 ++ELG +ME Sbjct: 319 MVELGASME 327>NP_001156729 Length = 1932 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LMELGMAME 9 ++ELG +ME Sbjct: 342 MVELGASME 350>NP_001001794 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MELGMAME 9 +ELG A+E Sbjct: 52 LELGQALE 59>XP_005261972 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MELGMAME 9 +ELG A+E Sbjct: 52 LELGQALE 59>XP_005261971 Length = 634 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MELGMAME 9 +ELG A+E Sbjct: 52 LELGQALE 59Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.134 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 381,442 Number of extensions: 450 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |