Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 17 2528 NP_444254 17 2528 NP_444253 17 2528 NP_444255 17 2528 NP_001248359 17 2528 NP_001136126 17 2528 NP_001136125 17 2528 NP_001129514 17 2528 NP_079543 17 2528 XP_005247551 17 2528 XP_005247550 17 2528 XP_006713712 17 2528 XP_005247549 17 2528 NP_114119 17 4312 XP_006713840 17 4312 XP_006713839 17 4312 NP_758424 16 7355 NP_061142 16 7355 NP_689914 16 7355 NP_066990 15 9605 NP_001103444 15 9605 NP_001159681 15 9605 NP_001159680 15 9605 NP_009217 15 9605 XP_005268428 15 9605 XP_005268427 15 9605 XP_005268426 15 9605 XP_006714818 15 9605>NP_444256 Length = 1794 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 831 LLGKKVSTK 839>NP_444254 Length = 1845 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 831 LLGKKVSTK 839>NP_444253 Length = 1914 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 900 LLGKKVSTK 908>NP_444255 Length = 1863 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 900 LLGKKVSTK 908>NP_001248359 Length = 199 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LVKKVSTK 9 L+KKVSTK Sbjct: 170 LLKKVSTK 177>NP_001136126 Length = 161 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LVKKVSTK 9 L+KKVSTK Sbjct: 132 LLKKVSTK 139>NP_001136125 Length = 166 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LVKKVSTK 9 L+KKVSTK Sbjct: 137 LLKKVSTK 144>NP_001129514 Length = 586 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LVKKVSTK 9 L+KKVSTK Sbjct: 170 LLKKVSTK 177>NP_079543 Length = 525 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LVKKVSTK 9 L+KKVSTK Sbjct: 109 LLKKVSTK 116>XP_005247551 Length = 1855 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 841 LLGKKVSTK 849>XP_005247550 Length = 1856 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 910 LLGKKVSTK 918>XP_006713712 Length = 1923 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 910 LLGKKVSTK 918>XP_005247549 Length = 1924 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLVKKVSTK 9 LL KKVSTK Sbjct: 910 LLGKKVSTK 918>NP_114119 Length = 886 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLVKKVST 8 LL+KKV+T Sbjct: 604 LLIKKVAT 611>XP_006713840 Length = 817 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLVKKVST 8 LL+KKV+T Sbjct: 604 LLIKKVAT 611>XP_006713839 Length = 874 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLVKKVST 8 LL+KKV+T Sbjct: 604 LLIKKVAT 611>NP_758424 Length = 1642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKKVSTK 9 VKKV+TK Sbjct: 1311 VKKVATK 1317>NP_061142 Length = 1642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VKKVSTK 9 VKKV+TK Sbjct: 1311 VKKVATK 1317>NP_689914 Length = 5058 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVKKVSTK 9 LVKKVS K Sbjct: 2528 LVKKVSGK 2535>NP_066990 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KKVSTK 9 KKVSTK Sbjct: 108 KKVSTK 113>NP_001103444 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 155 LLIDKVST 162>NP_001159681 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 399 LLIDKVST 406>NP_001159680 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 399 LLIDKVST 406>NP_009217 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_005268428 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_005268427 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_005268426 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_006714818 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLVKKVST 8 LL+ KVST Sbjct: 399 LLIDKVST 406Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.126 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 284,371 Number of extensions: 380 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |