Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 21 175 XP_005271621 21 175 XP_006718907 21 175 XP_006718906 21 175 XP_005271619 21 175 XP_005271618 21 175 NP_079279 18 1935 NP_065920 18 1935 NP_036335 17 4312 XP_005251688 17 4312 NP_036423 16 5631 NP_001258652 16 5631 NP_110420 16 5631 XP_006719768 16 5631 XP_006714860 16 5631 XP_006714859 16 5631 XP_005268570 16 5631 NP_579875 16 7355 NP_758847 16 7355 NP_036415 16 7355 NP_775871 16 7355 NP_001121636 15 9605 NP_000323 15 9605 NP_000748 15 9605 NP_757350 15 9605 NP_757351 15 9605 NP_757349 15 9605 NP_001095139 15 9605 NP_003857 15 9605 XP_006726395 15 9605 XP_005263382 15 9605 XP_005263381 15 9605 XP_006714466 15 9605 XP_005263380 15 9605 XP_006714465 15 9605 XP_005263379 15 9605 XP_006714464 15 9605 XP_006714463 15 9605>NP_000042 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSLTMKNC 9 L+SLTMKNC Sbjct: 612 LVSLTMKNC 620>XP_005271621 Length = 2708 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSLTMKNC 9 L+SLTMKNC Sbjct: 264 LVSLTMKNC 272>XP_006718907 Length = 3050 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSLTMKNC 9 L+SLTMKNC Sbjct: 612 LVSLTMKNC 620>XP_006718906 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSLTMKNC 9 L+SLTMKNC Sbjct: 612 LVSLTMKNC 620>XP_005271619 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSLTMKNC 9 L+SLTMKNC Sbjct: 612 LVSLTMKNC 620>XP_005271618 Length = 3056 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSLTMKNC 9 L+SLTMKNC Sbjct: 612 LVSLTMKNC 620>NP_079279 Length = 1910 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 +SLT KNC Sbjct: 1576 ISLTSKNC 1583>NP_065920 Length = 890 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LLSLTMKNC 9 LLSL MK C Sbjct: 494 LLSLRMKTC 502>NP_036335 Length = 328 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LTMKNC 9 LT+KNC Sbjct: 283 LTLKNC 288>XP_005251688 Length = 221 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LTMKNC 9 LT+KNC Sbjct: 176 LTLKNC 181>NP_036423 Length = 2120 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSLTMKNC 9 LL LT+++C Sbjct: 251 LLELTLEHC 259>NP_001258652 Length = 943 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLSLTMKNC 9 L+ +TM NC Sbjct: 682 LVGVTMTNC 690>NP_110420 Length = 1113 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLSLTMKNC 9 L+ +TM NC Sbjct: 852 LVGVTMTNC 860>XP_006719768 Length = 2120 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSLTMKNC 9 LL LT+++C Sbjct: 251 LLELTLEHC 259>XP_006714860 Length = 1146 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLSLTMKNC 9 L+ +TM NC Sbjct: 885 LVGVTMTNC 893>XP_006714859 Length = 1188 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLSLTMKNC 9 L+ +TM NC Sbjct: 927 LVGVTMTNC 935>XP_005268570 Length = 1188 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLSLTMKNC 9 L+ +TM NC Sbjct: 927 LVGVTMTNC 935>NP_579875 Length = 436 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSLTMKNC 9 L LT+K C Sbjct: 312 LGLTLKRC 319>NP_758847 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSLTMKNC 9 L LT+K C Sbjct: 301 LGLTLKRC 308>NP_036415 Length = 466 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSLTMKNC 9 L LTM+ C Sbjct: 311 LGLTMRRC 318>NP_775871 Length = 8384 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 + LT++NC Sbjct: 1169 IDLTLQNC 1176>NP_001121636 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSLTMKN 8 +SLT+KN Sbjct: 683 ISLTLKN 689>NP_000323 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSLTMKN 8 +SLT+KN Sbjct: 683 ISLTLKN 689>NP_000748 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 LSL +K+C Sbjct: 115 LSLRLKSC 122>NP_757350 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 LSL +K+C Sbjct: 115 LSLRLKSC 122>NP_757351 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 LSL +K+C Sbjct: 115 LSLRLKSC 122>NP_757349 Length = 438 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 LSL +K+C Sbjct: 115 LSLRLKSC 122>NP_001095139 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 583 LILTLKDC 590>NP_003857 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 583 LILTLKDC 590>XP_006726395 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSLTMKNC 9 L +LT+K+C Sbjct: 42 LETLTLKDC 50>XP_005263382 Length = 753 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 398 LILTLKDC 405>XP_005263381 Length = 762 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 407 LILTLKDC 414>XP_006714466 Length = 762 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 407 LILTLKDC 414>XP_005263380 Length = 809 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 454 LILTLKDC 461>XP_006714465 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 583 LILTLKDC 590>XP_005263379 Length = 933 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 592 LILTLKDC 599>XP_006714464 Length = 938 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 583 LILTLKDC 590>XP_006714463 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLTMKNC 9 L LT+K+C Sbjct: 592 LILTLKDC 599Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 383,520 Number of extensions: 473 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |