Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 17 3301 NP_005913 17 3301 XP_005267046 17 3301 XP_005267045 17 3301 NP_001238892 16 7355 NP_055722 16 7355 NP_001238891 16 7355 NP_056410 16 7355 XP_006725061 16 7355 XP_005252857 15 9605 XP_006718211 15 9605>NP_006715 Length = 1558 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLSIKLLVR 9 LLSIK LVR Sbjct: 645 LLSIKQLVR 653>NP_005913 Length = 1608 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLSIKLLVR 9 LLSIK LVR Sbjct: 645 LLSIKQLVR 653>XP_005267046 Length = 1554 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLSIKLLVR 9 LLSIK LVR Sbjct: 645 LLSIKQLVR 653>XP_005267045 Length = 1604 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLSIKLLVR 9 LLSIK LVR Sbjct: 645 LLSIKQLVR 653>NP_001238892 Length = 791 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LLSIKLLVR 9 LLS+++L+R Sbjct: 455 LLSLEILIR 463>NP_055722 Length = 1578 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIKLLVR 9 LS+KLL R Sbjct: 1549 LSVKLLAR 1556>NP_001238891 Length = 871 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LLSIKLLVR 9 LLS+++L+R Sbjct: 455 LLSLEILIR 463>NP_056410 Length = 871 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LLSIKLLVR 9 LLS+++L+R Sbjct: 455 LLSLEILIR 463>XP_006725061 Length = 904 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LLSIKLLVR 9 LLS+++L+R Sbjct: 455 LLSLEILIR 463>XP_005252857 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSIKLLV 8 LLS+KLL+ Sbjct: 70 LLSLKLLL 77>XP_006718211 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSIKLLV 8 LLS+KLL+ Sbjct: 70 LLSLKLLL 77Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.342 0.160 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 286,196 Number of extensions: 238 Number of successful extensions: 11 Number of sequences better than 10000.0: 11 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |