Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 665 NP_001075109 19 665 NP_003706 17 3301 NP_001276978 17 3301 XP_006714460 17 3301 XP_006714459 17 3301 XP_006710243 17 3301 NP_149113 17 4312 NP_057197 16 5631 NP_001153780 16 5631 NP_061849 16 5631 NP_114121 16 5631 XP_006721606 16 5631 XP_006721605 16 5631 XP_006721604 16 5631 XP_005256733 16 5631 XP_005266629 16 5631 XP_005266626 16 5631 XP_005266625 16 5631 XP_005269040 16 5631 NP_057427 16 7355 NP_055707 16 7355 NP_001273128 16 7355 NP_001273123 16 7355 NP_001273118 16 7355 NP_001273117 16 7355 NP_061754 16 7355 NP_001177766 15 9605 NP_001128512 15 9605 NP_004073 15 9605 NP_075408 15 9605 NP_001128513 15 9605 NP_001177765 15 9605 NP_055950 15 9605 XP_005250292 15 9605>NP_008835 Length = 4128 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLSETINTE 9 L SETINTE Sbjct: 1562 LFSETINTE 1570>NP_001075109 Length = 4097 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLSETINTE 9 L SETINTE Sbjct: 1562 LFSETINTE 1570>NP_003706 Length = 962 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 +L+ETINT Sbjct: 329 ILTETINT 336>NP_001276978 Length = 973 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 +L+ETINT Sbjct: 333 ILTETINT 340>XP_006714460 Length = 966 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 +L+ETINT Sbjct: 333 ILTETINT 340>XP_006714459 Length = 969 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 +L+ETINT Sbjct: 329 ILTETINT 336>XP_006710243 Length = 98 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SETINTE 9 SET+NTE Sbjct: 88 SETLNTE 94>NP_149113 Length = 395 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSETINTE 9 LSET NTE Sbjct: 343 LSETDNTE 350>NP_057197 Length = 764 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 L+SET+N+ Sbjct: 644 LMSETVNS 651>NP_001153780 Length = 707 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSETINT 8 LLSET NT Sbjct: 603 LLSETKNT 610>NP_061849 Length = 506 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 +++ETINT Sbjct: 252 IINETINT 259>NP_114121 Length = 719 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSETINT 8 LLSET NT Sbjct: 615 LLSETKNT 622>XP_006721606 Length = 680 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 L+SET+N+ Sbjct: 644 LMSETVNS 651>XP_006721605 Length = 680 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 L+SET+N+ Sbjct: 644 LMSETVNS 651>XP_006721604 Length = 733 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 L+SET+N+ Sbjct: 644 LMSETVNS 651>XP_005256733 Length = 763 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 L+SET+N+ Sbjct: 643 LMSETVNS 650>XP_005266629 Length = 518 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSETINT 8 LLSET NT Sbjct: 414 LLSETKNT 421>XP_005266626 Length = 695 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSETINT 8 LLSET NT Sbjct: 591 LLSETKNT 598>XP_005266625 Length = 707 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSETINT 8 LLSET NT Sbjct: 603 LLSETKNT 610>XP_005269040 Length = 406 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSETINT 8 +++ETINT Sbjct: 152 IINETINT 159>NP_057427 Length = 3114 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSETINTE 9 LLSET++ E Sbjct: 946 LLSETLSLE 954>NP_055707 Length = 1271 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ETINTE 9 ET+NTE Sbjct: 593 ETVNTE 598>NP_001273128 Length = 1271 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ETINTE 9 ET+NTE Sbjct: 593 ETVNTE 598>NP_001273123 Length = 1316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ETINTE 9 ET+NTE Sbjct: 638 ETVNTE 643>NP_001273118 Length = 1337 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ETINTE 9 ET+NTE Sbjct: 659 ETVNTE 664>NP_001273117 Length = 1349 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ETINTE 9 ET+NTE Sbjct: 671 ETVNTE 676>NP_061754 Length = 797 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSETINTE 9 LLSET++ E Sbjct: 85 LLSETLDRE 93>NP_001177766 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSETINTE 9 L ET+N E Sbjct: 704 LDETVNVE 711>NP_001128512 Length = 1253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSETINTE 9 L ET+N E Sbjct: 691 LDETVNVE 698>NP_004073 Length = 1278 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSETINTE 9 L ET+N E Sbjct: 711 LDETVNVE 718>NP_075408 Length = 1144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSETINTE 9 L ET+N E Sbjct: 577 LDETVNVE 584>NP_001128513 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSETINTE 9 L ET+N E Sbjct: 577 LDETVNVE 584>NP_001177765 Length = 1236 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSETINTE 9 L ET+N E Sbjct: 674 LDETVNVE 681>NP_055950 Length = 2012 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSETINTE 9 LSET+N + Sbjct: 1786 LSETVNRD 1793>XP_005250292 Length = 1654 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSETINTE 9 LSET+N + Sbjct: 1428 LSETVNRD 1435Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.118 0.270 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 343,065 Number of extensions: 518 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |