Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_064450 18 1135 XP_005273257 18 1135 NP_001073998 18 1935 XP_005249879 18 1935 NP_001157862 17 4312 NP_055062 17 4312 NP_001157861 17 4312 NP_001157860 17 4312 NP_001157859 17 4312 NP_001157858 17 4312 NP_057424 17 4312 XP_006714485 17 4312 XP_005263418 17 4312 XP_005263417 17 4312 XP_006714484 17 4312 XP_005263416 17 4312 XP_006714483 17 4312 XP_005263415 17 4312 NP_001273758 16 5631 NP_660202 16 5631 NP_001160158 16 5631 NP_000280 16 5631 NP_001160160 16 5631 XP_006719527 16 5631 XP_006719526 16 5631 XP_005269037 16 5631 XP_005269036 16 5631 XP_005269035 16 5631 XP_005269034 16 5631 XP_005269033 16 5631 XP_005269032 16 5631 XP_005269031 16 5631 NP_001160159 16 5631 NP_036565 16 7355 NP_001005526 16 7355 NP_000245 15 9605 NP_001258463 15 9605 NP_001380 15 9605 NP_075047 15 9605 XP_006724038 15 9605 XP_006723924 15 9605 XP_006723923 15 9605 XP_006723922 15 9605 XP_005260572 15 9605 XP_005273202 15 9605 XP_006711833 15 9605 XP_005273200 15 9605 XP_005273198 15 9605>NP_064450 Length = 1722 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSDIQQA Sbjct: 195 LLSDIQQA 202>XP_005273257 Length = 1726 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSDIQQA Sbjct: 195 LLSDIQQA 202>NP_001073998 Length = 483 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 LL+DIQQ T Sbjct: 49 LLADIQQGT 57>XP_005249879 Length = 483 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 LL+DIQQ T Sbjct: 49 LLADIQQGT 57>NP_001157862 Length = 827 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 204 LSDIYQAT 211>NP_055062 Length = 1499 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 59 LSDIYQAT 66>NP_001157861 Length = 1391 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 204 LSDIYQAT 211>NP_001157860 Length = 1504 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 204 LSDIYQAT 211>NP_001157859 Length = 1509 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 204 LSDIYQAT 211>NP_001157858 Length = 1609 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 204 LSDIYQAT 211>NP_057424 Length = 1601 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 204 LSDIYQAT 211>XP_006714485 Length = 1585 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 104 LSDIYQAT 111>XP_005263418 Length = 1654 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 214 LSDIYQAT 221>XP_005263417 Length = 1660 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 220 LSDIYQAT 227>XP_006714484 Length = 1685 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 220 LSDIYQAT 227>XP_005263416 Length = 1693 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 220 LSDIYQAT 227>XP_006714483 Length = 1695 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 214 LSDIYQAT 221>XP_005263415 Length = 1701 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSDIQQAT 9 LSDI QAT Sbjct: 220 LSDIYQAT 227>NP_001273758 Length = 525 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 LL+D+ QAT Sbjct: 16 LLTDLYQAT 24>NP_660202 Length = 538 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 LL+D+ QAT Sbjct: 16 LLTDLYQAT 24>NP_001160158 Length = 851 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 206 LLSDLQKA 213>NP_000280 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 135 LLSDLQKA 142>NP_001160160 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 135 LLSDLQKA 142>XP_006719527 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 135 LLSDLQKA 142>XP_006719526 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 135 LLSDLQKA 142>XP_005269037 Length = 811 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 166 LLSDLQKA 173>XP_005269036 Length = 851 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 206 LLSDLQKA 213>XP_005269035 Length = 851 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 206 LLSDLQKA 213>XP_005269034 Length = 851 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 206 LLSDLQKA 213>XP_005269033 Length = 883 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 238 LLSDLQKA 245>XP_005269032 Length = 883 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 238 LLSDLQKA 245>XP_005269031 Length = 883 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 238 LLSDLQKA 245>NP_001160159 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSDIQQA 8 LLSD+Q+A Sbjct: 135 LLSDLQKA 142>NP_036565 Length = 1304 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 LL+DI Q+T Sbjct: 90 LLNDIPQST 98>NP_001005526 Length = 144 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 LL+DI Q+T Sbjct: 90 LLNDIPQST 98>NP_000245 Length = 1265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSDIQQAT 9 L+DI+Q+T Sbjct: 1192 LADIEQST 1199>NP_001258463 Length = 1994 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 +L D+Q+AT Sbjct: 1534 ILYDLQEAT 1542>NP_001380 Length = 2012 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 +L D+Q+AT Sbjct: 1534 ILYDLQEAT 1542>NP_075047 Length = 851 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LSDIQQ 7 LSDIQQ Sbjct: 746 LSDIQQ 751>XP_006724038 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSDIQQAT 9 +L D+Q+AT Sbjct: 1429 ILYDLQEAT 1437>XP_006723924 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LSDIQQ 7 LSDIQQ Sbjct: 747 LSDIQQ 752>XP_006723923 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LSDIQQ 7 LSDIQQ Sbjct: 747 LSDIQQ 752>XP_006723922 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LSDIQQ 7 LSDIQQ Sbjct: 747 LSDIQQ 752>XP_005260572 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LSDIQQ 7 LSDIQQ Sbjct: 747 LSDIQQ 752>XP_005273202 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSDIQQAT 9 L+DI+Q+T Sbjct: 646 LADIEQST 653>XP_006711833 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSDIQQAT 9 L+DI+Q+T Sbjct: 880 LADIEQST 887>XP_005273200 Length = 1214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSDIQQAT 9 L+DI+Q+T Sbjct: 1141 LADIEQST 1148>XP_005273198 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSDIQQAT 9 L+DI+Q+T Sbjct: 1191 LADIEQST 1198Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.124 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 366,384 Number of extensions: 472 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |