Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001119588 18 1135 NP_001119587 18 1135 NP_001119589 18 1135 NP_001263627 18 1135 NP_001263628 18 1135 NP_001263626 18 1135 NP_004648 18 1935 NP_001073929 17 3301 XP_006713676 17 3301 XP_005247478 17 3301 NP_006429 16 5631 NP_036364 16 5631 XP_005257299 16 5631 NP_473371 16 7355 NP_001271230 16 7355 NP_001177188 16 7355 NP_002410 16 7355 NP_001271231 16 7355 NP_061155 16 7355 XP_003403542 16 7355 XP_006715810 16 7355 XP_006715809 16 7355 XP_005247328 16 7355 XP_003403793 16 7355 NP_705838 15 9605 NP_671732 15 9605 NP_001158307 15 9605 NP_061952 15 9605 NP_853514 15 9605 NP_001275682 15 9605 NP_005487 15 9605 NP_001002800 15 9605 XP_005258568 15 9605 XP_006713522 15 9605 XP_006712095 15 9605 XP_006712094 15 9605 XP_006712093 15 9605 XP_005264429 15 9605 XP_005246216 15 9605 XP_006711947 15 9605 XP_005273219 15 9605 XP_006711444 15 9605 NP_006203 15 9605 NP_789781 15 9605 NP_060022 15 9605 NP_001229267 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 264 LLGRNSFEV 272>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 225 LLGRNSFEV 233>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 264 LLGRNSFEV 272>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 264 LLGRNSFEV 272>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 225 LLGRNSFEV 233>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 225 LLGRNSFEV 233>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 225 LLGRNSFEV 233>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 264 LLGRNSFEV 272>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 225 LLGRNSFEV 233>NP_001119588 Length = 209 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 132 LLGRNSFEV 140>NP_001119587 Length = 261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 132 LLGRNSFEV 140>NP_001119589 Length = 214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 132 LLGRNSFEV 140>NP_001263627 Length = 182 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 105 LLGRNSFEV 113>NP_001263628 Length = 187 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 105 LLGRNSFEV 113>NP_001263626 Length = 234 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LL RNSFEV Sbjct: 105 LLGRNSFEV 113>NP_004648 Length = 425 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LLRRN F+V Sbjct: 149 LLRRNHFKV 157>NP_001073929 Length = 560 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 L+RN FEV Sbjct: 172 LKRNQFEV 179>XP_006713676 Length = 560 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 L+RN FEV Sbjct: 172 LKRNQFEV 179>XP_005247478 Length = 560 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 L+RN FEV Sbjct: 172 LKRNQFEV 179>NP_006429 Length = 277 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLRRNSF 7 LLRRN F Sbjct: 7 LLRRNQF 13>NP_036364 Length = 390 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LLRR +F+V Sbjct: 145 LLRRRNFKV 153>XP_005257299 Length = 225 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLRRNSFEV 9 LLRR +F+V Sbjct: 145 LLRRRNFKV 153>NP_473371 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 +RRN+F V Sbjct: 59 MRRNAFSV 66>NP_001271230 Length = 1087 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 RRN+FE+ Sbjct: 1015 RRNTFEL 1021>NP_001177188 Length = 180 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLRRNSF 7 LLR NSF Sbjct: 5 LLRENSF 11>NP_002410 Length = 847 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RRNSFEV 9 RRN FEV Sbjct: 513 RRNVFEV 519>NP_001271231 Length = 1086 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 RRN+FE+ Sbjct: 1014 RRNTFEL 1020>NP_061155 Length = 1124 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 RRN+FE+ Sbjct: 1052 RRNTFEL 1058>XP_003403542 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 R+NSFE+ Sbjct: 517 RKNSFEL 523>XP_006715810 Length = 1105 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 RRN+FE+ Sbjct: 1033 RRNTFEL 1039>XP_006715809 Length = 1142 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 RRN+FE+ Sbjct: 1070 RRNTFEL 1076>XP_005247328 Length = 165 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLRRNSF 7 LLR NSF Sbjct: 5 LLRENSF 11>XP_003403793 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RRNSFEV 9 R+NSFE+ Sbjct: 517 RKNSFEL 523>NP_705838 Length = 4069 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RRNSFE 8 +RNSFE Sbjct: 152 KRNSFE 157>NP_671732 Length = 322 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 +RRN+F + Sbjct: 56 MRRNAFSI 63>NP_001158307 Length = 865 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LLRRNSFE 8 +LR N FE Sbjct: 266 ILRENDFE 273>NP_061952 Length = 865 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LLRRNSFE 8 +LR N FE Sbjct: 266 ILRENDFE 273>NP_853514 Length = 1732 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLRRNSF 7 LLRRN++ Sbjct: 1012 LLRRNTY 1018>NP_001275682 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LRRNSFEV 9 LR N FE+ Sbjct: 1226 LRNNMFEI 1233>NP_005487 Length = 1288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LRRNSFEV 9 LR N FE+ Sbjct: 1251 LRNNMFEI 1258>NP_001002800 Length = 1288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LRRNSFEV 9 LR N FE+ Sbjct: 1251 LRNNMFEI 1258>XP_005258568 Length = 1029 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLRRNSFE 8 +LR+NS E Sbjct: 822 ILRKNSLE 829>XP_006713522 Length = 1210 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LRRNSFEV 9 LR N FE+ Sbjct: 1173 LRNNMFEI 1180>XP_006712095 Length = 849 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 LRRNS+ + Sbjct: 241 LRRNSYGI 248>XP_006712094 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 LRRNS+ + Sbjct: 241 LRRNSYGI 248>XP_006712093 Length = 1460 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 LRRNS+ + Sbjct: 241 LRRNSYGI 248>XP_005264429 Length = 1472 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 LRRNS+ + Sbjct: 241 LRRNSYGI 248>XP_005246216 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RRNSFE 8 RRN+FE Sbjct: 59 RRNNFE 64>XP_006711947 Length = 441 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RRNSFE 8 RRN+FE Sbjct: 59 RRNNFE 64>XP_005273219 Length = 263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LRRNSF 7 +RRNSF Sbjct: 220 MRRNSF 225>XP_006711444 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LRRNSF 7 +RRNSF Sbjct: 364 MRRNSF 369>NP_006203 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LRRNSF 7 +RRNSF Sbjct: 462 MRRNSF 467>NP_789781 Length = 1048 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLRRNSFE 8 +LR+NS E Sbjct: 822 ILRKNSLE 829>NP_060022 Length = 1458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 LRRNS+ + Sbjct: 241 LRRNSYGI 248>NP_001229267 Length = 1453 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRNSFEV 9 LRRNS+ + Sbjct: 241 LRRNSYGI 248Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.145 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 483,662 Number of extensions: 835 Number of successful extensions: 55 Number of sequences better than 10000.0: 55 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 55 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |