Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1935 NP_001035957 18 1935 XP_006721991 18 1935 XP_006721990 18 1935 XP_006721989 18 1935 XP_005258041 18 1935 XP_006721988 18 1935 XP_006721987 18 1935 XP_006721986 18 1935 XP_005258040 18 1935 XP_006721985 18 1935 NP_005453 16 7355 NP_055950 16 7355 XP_005250292 16 7355 XP_003846820 16 7355>NP_000258 Length = 2818 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1304 LLRIVITSS 1312>NP_001035957 Length = 2839 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1304 LLRIVITSS 1312>XP_006721991 Length = 1632 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1314 LLRIVITSS 1322>XP_006721990 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1314 LLRIVITSS 1322>XP_006721989 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1314 LLRIVITSS 1322>XP_005258041 Length = 2836 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1304 LLRIVITSS 1312>XP_006721988 Length = 2846 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1314 LLRIVITSS 1322>XP_006721987 Length = 2849 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1314 LLRIVITSS 1322>XP_006721986 Length = 2854 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1301 LLRIVITSS 1309>XP_005258040 Length = 2857 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1304 LLRIVITSS 1312>XP_006721985 Length = 2867 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLQIVITSS 9 LL+IVITSS Sbjct: 1314 LLRIVITSS 1322>NP_005453 Length = 1142 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLQIVITSS 9 LLQI +TSS Sbjct: 337 LLQIPMTSS 345>NP_055950 Length = 2012 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLQIVITSS 9 L Q+++TSS Sbjct: 1626 LCQVILTSS 1634>XP_005250292 Length = 1654 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLQIVITSS 9 L Q+++TSS Sbjct: 1268 LCQVILTSS 1276>XP_003846820 Length = 1177 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLQIVITSS 9 LLQI +TSS Sbjct: 372 LLQIPMTSS 380Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.135 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 293,093 Number of extensions: 261 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |