Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1482 XP_005271621 18 1482 XP_006718907 18 1482 XP_006718906 18 1482 XP_005271619 18 1482 XP_005271618 18 1482 NP_002372 16 5631 NP_036325 16 5631 NP_998773 16 5631 NP_002371 16 5631 NP_085072 16 5631 XP_005250977 16 5631 NP_055568 16 7355 NP_085095 16 7355 NP_085080 16 7355 NP_003824 16 7355 XP_005260654 16 7355 XP_005271906 16 7355 XP_006718144 16 7355 XP_005271905 16 7355 XP_005271903 16 7355 NP_003715 15 9605 NP_001070995 15 9605 NP_001266281 15 9605 NP_006322 15 9605 NP_219499 15 9605 XP_006716742 15 9605 XP_006716741 15 9605 XP_006716740 15 9605 XP_005250691 15 9605>NP_000042 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 LLMLIDSS Sbjct: 927 LLMLIDSS 934>XP_005271621 Length = 2708 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 LLMLIDSS Sbjct: 579 LLMLIDSS 586>XP_006718907 Length = 3050 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 LLMLIDSS Sbjct: 927 LLMLIDSS 934>XP_006718906 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 LLMLIDSS Sbjct: 927 LLMLIDSS 934>XP_005271619 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 LLMLIDSS Sbjct: 927 LLMLIDSS 934>XP_005271618 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 LLMLIDSS Sbjct: 927 LLMLIDSS 934>NP_002372 Length = 486 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 84 LVFIIDSSR 92>NP_036325 Length = 537 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LLMLIDSSR 9 L LIDSSR Sbjct: 239 LTFLIDSSR 247>NP_998773 Length = 117 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MLIDSSR 9 M+IDSSR Sbjct: 1 MIIDSSR 7>NP_002371 Length = 956 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 58 LVFIIDSSR 66>NP_085072 Length = 937 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 58 LVFIIDSSR 66>XP_005250977 Length = 818 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 58 LVFIIDSSR 66>NP_055568 Length = 1282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 +LMLID+S Sbjct: 150 VLMLIDAS 157>NP_085095 Length = 499 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 35 LVFVIDSSR 43>NP_085080 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 35 LVFVIDSSR 43>NP_003824 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 35 LVFVIDSSR 43>XP_005260654 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L+ +IDSSR Sbjct: 35 LVFVIDSSR 43>XP_005271906 Length = 879 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 +LMLID+S Sbjct: 150 VLMLIDAS 157>XP_006718144 Length = 886 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 +LMLID+S Sbjct: 150 VLMLIDAS 157>XP_005271905 Length = 1219 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 +LMLID+S Sbjct: 150 VLMLIDAS 157>XP_005271903 Length = 1282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLMLIDSS 8 +LMLID+S Sbjct: 150 VLMLIDAS 157>NP_003715 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LMLIDSSR 9 ++L+DSSR Sbjct: 295 VLLLDSSR 302>NP_001070995 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LMLIDSSR 9 ++L+DSSR Sbjct: 295 VLLLDSSR 302>NP_001266281 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LMLIDSSR 9 ++L+DSSR Sbjct: 295 VLLLDSSR 302>NP_006322 Length = 244 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLMLIDS 7 LLML+DS Sbjct: 92 LLMLMDS 98>NP_219499 Length = 1663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L ++IDSSR Sbjct: 563 LKVIIDSSR 571>XP_006716742 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LMLIDSSR 9 ++L+DSSR Sbjct: 295 VLLLDSSR 302>XP_006716741 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LMLIDSSR 9 ++L+DSSR Sbjct: 295 VLLLDSSR 302>XP_006716740 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LMLIDSSR 9 ++L+DSSR Sbjct: 295 VLLLDSSR 302>XP_005250691 Length = 1645 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLMLIDSSR 9 L ++IDSSR Sbjct: 545 LKVIIDSSR 553Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.145 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 279,245 Number of extensions: 195 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |