Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 20 509 NP_004561 20 509 NP_001275703 20 509 XP_005253450 20 509 XP_006719151 20 509 NP_005488 17 4312 XP_005256978 17 4312 XP_005256977 17 4312 NP_001073852 17 4312 NP_060264 16 5631 XP_005251551 16 5631 XP_006716857 16 5631 NP_001186704 16 7355 NP_001295 16 7355 NP_477352 16 7355 NP_060392 16 7355 NP_775901 16 7355 NP_002051 16 7355 XP_005261692 16 7355 XP_005261691 16 7355 XP_005266736 16 7355 XP_006722498 16 7355 XP_006722497 16 7355 XP_005270807 16 7355 NP_001175 15 9605 NP_001274152 15 9605 NP_689681 15 9605 NP_777582 15 9605 NP_054858 15 9605 XP_006721789 15 9605 XP_006716590 15 9605 XP_006716589 15 9605>NP_001275701 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 LLLNL+EMM Sbjct: 1153 LLLNLLEMM 1161>NP_004561 Length = 1445 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 LLLNL+EMM Sbjct: 1112 LLLNLLEMM 1120>NP_001275703 Length = 1264 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 LLLNL+EMM Sbjct: 931 LLLNLLEMM 939>XP_005253450 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 LLLNL+EMM Sbjct: 1153 LLLNLLEMM 1161>XP_006719151 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 LLLNL+EMM Sbjct: 1153 LLLNLLEMM 1161>NP_005488 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLN+ EM+ Sbjct: 243 LLLNIWEML 251>XP_005256978 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLN+ EM+ Sbjct: 243 LLLNIWEML 251>XP_005256977 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLN+ EM+ Sbjct: 243 LLLNIWEML 251>NP_001073852 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLN+ EM+ Sbjct: 243 LLLNIWEML 251>NP_060264 Length = 1801 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 L LNL+EM+ Sbjct: 380 LALNLLEMI 388>XP_005251551 Length = 1801 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 L LNL+EM+ Sbjct: 380 LALNLLEMI 388>XP_006716857 Length = 1834 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 L LNL+EM+ Sbjct: 413 LALNLLEMI 421>NP_001186704 Length = 1133 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLNL+E + Sbjct: 326 LLLNLIEYL 334>NP_001295 Length = 1380 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLNL+E + Sbjct: 573 LLLNLIEYL 581>NP_477352 Length = 2102 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLLNLMEM 8 LL+NL+E+ Sbjct: 729 LLMNLLEL 736>NP_060392 Length = 669 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLLNLMEM 8 L LNL+EM Sbjct: 529 LYLNLLEM 536>NP_775901 Length = 2226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLLNLMEM 8 LLLN ME+ Sbjct: 1218 LLLNFMEV 1225>NP_002051 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 L+LNL+E++ Sbjct: 221 LVLNLLELV 229>XP_005261692 Length = 1854 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLLNLMEM 8 LL+NL+E+ Sbjct: 757 LLMNLLEL 764>XP_005261691 Length = 2099 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLLNLMEM 8 LL+NL+E+ Sbjct: 757 LLMNLLEL 764>XP_005266736 Length = 1314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLLNLMEM 8 LLLN ME+ Sbjct: 306 LLLNFMEV 313>XP_006722498 Length = 2059 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLLNLMEM 8 LLLN ME+ Sbjct: 1219 LLLNFMEV 1226>XP_006722497 Length = 2227 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLLNLMEM 8 LLLN ME+ Sbjct: 1219 LLLNFMEV 1226>XP_005270807 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LLLNLMEMM 9 L+LNL+E++ Sbjct: 221 LVLNLLELV 229>NP_001175 Length = 2644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LLNLME 7 LLNLME Sbjct: 809 LLNLME 814>NP_001274152 Length = 1791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LLNLMEM 8 L+NLME+ Sbjct: 1137 LINLMEL 1143>NP_689681 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLNL+ ++ Sbjct: 117 LLLNLLSLL 125>NP_777582 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLL L+E+M Sbjct: 247 LLLRLVEVM 255>NP_054858 Length = 1791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LLNLMEM 8 L+NLME+ Sbjct: 1137 LINLMEL 1143>XP_006721789 Length = 408 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLLNL+ ++ Sbjct: 117 LLLNLLSLL 125>XP_006716590 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLL L+E+M Sbjct: 140 LLLRLVEVM 148>XP_006716589 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLNLMEMM 9 LLL L+E+M Sbjct: 247 LLLRLVEVM 255Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.148 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 356,282 Number of extensions: 561 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |