Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_056161 18 1482 XP_006720156 18 1482 NP_000360 18 1935 XP_005268094 18 1935 NP_852111 17 3301 NP_000136 17 3301 NP_000278 17 4312 NP_005497 17 4312 NP_001191184 17 4312 XP_005249237 17 4312 NP_000224 16 5631 NP_004572 16 5631 NP_878256 16 5631 XP_005276467 16 5631 XP_005268017 16 5631 XP_005268016 16 5631 XP_005264366 16 5631 XP_006712078 16 5631 NP_057332 16 7355 NP_006085 16 7355 NP_001157743 16 7355 NP_872584 16 7355 NP_001136069 16 7355 XP_005266305 16 7355 XP_005266304 16 7355 XP_006718488 16 7355 XP_005273432 16 7355 XP_005273431 16 7355 NP_006822 16 7355 NP_076411 16 7355 NP_001005280 15 9605 NP_001177418 15 9605 NP_874362 15 9605 NP_001177637 15 9605>NP_056161 Length = 2539 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLLITS DL Sbjct: 581 LLLITSADL 589>XP_006720156 Length = 2497 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLLITS DL Sbjct: 581 LLLITSADL 589>NP_000360 Length = 764 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLLI SVDL Sbjct: 467 LLLIASVDL 475>XP_005268094 Length = 764 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLLI SVDL Sbjct: 467 LLLIASVDL 475>NP_852111 Length = 669 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLLI SVD+ Sbjct: 389 LLLIASVDI 397>NP_000136 Length = 695 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLLI SVD+ Sbjct: 415 LLLIASVDI 423>NP_000278 Length = 980 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LLLITSVDL 9 +LL+T+VDL Sbjct: 525 VLLLTAVDL 533>NP_005497 Length = 478 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+TSV L Sbjct: 15 LLLVTSVTL 23>NP_001191184 Length = 335 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+TSV L Sbjct: 15 LLLVTSVTL 23>XP_005249237 Length = 892 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LLLITSVDL 9 +LL+T+VDL Sbjct: 437 VLLLTAVDL 445>NP_000224 Length = 699 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLLITSVD 8 LLLI SVD Sbjct: 412 LLLIASVD 419>NP_004572 Length = 567 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+T +DL Sbjct: 462 LLLVTHLDL 470>NP_878256 Length = 567 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+T +DL Sbjct: 462 LLLVTHLDL 470>XP_005276467 Length = 97 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 L L+TSVDL Sbjct: 52 LHLLTSVDL 60>XP_005268017 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+T +DL Sbjct: 192 LLLVTHLDL 200>XP_005268016 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+T +DL Sbjct: 192 LLLVTHLDL 200>XP_005264366 Length = 380 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLLITSVD 8 LLLI SVD Sbjct: 93 LLLIASVD 100>XP_006712078 Length = 389 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLLITSVD 8 LLLI SVD Sbjct: 102 LLLIASVD 109>NP_057332 Length = 1901 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLITSVDL 9 LLIT++D+ Sbjct: 1810 LLITNIDM 1817>NP_006085 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLITSVD 8 LL+TSVD Sbjct: 1007 LLLTSVD 1013>NP_001157743 Length = 1017 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLITSVD 8 LL+TSVD Sbjct: 933 LLLTSVD 939>NP_872584 Length = 1528 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLITSVD 8 LL+TSVD Sbjct: 1444 LLLTSVD 1450>NP_001136069 Length = 361 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLITSVDL 9 +++TSVDL Sbjct: 323 IVVTSVDL 330>XP_005266305 Length = 1856 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLITSVDL 9 LLIT++D+ Sbjct: 1765 LLITNIDM 1772>XP_005266304 Length = 1873 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLITSVDL 9 LLIT++D+ Sbjct: 1782 LLITNIDM 1789>XP_006718488 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLITSVDL 9 +++TSVDL Sbjct: 387 IVVTSVDL 394>XP_005273432 Length = 1125 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLITSVD 8 LL+TSVD Sbjct: 1041 LLLTSVD 1047>XP_005273431 Length = 1528 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLITSVD 8 LL+TSVD Sbjct: 1444 LLLTSVD 1450>NP_006822 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLITSVDL 9 +++TSVDL Sbjct: 387 IVVTSVDL 394>NP_076411 Length = 317 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 LLL+TSV L Sbjct: 133 LLLVTSVFL 141>NP_001005280 Length = 316 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLLITSVDL 9 ++ +TSVDL Sbjct: 45 IVTVTSVDL 53>NP_001177418 Length = 24 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLLITSVDL 9 LLLI +DL Sbjct: 10 LLLIREIDL 18>NP_874362 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLLITSVDL 9 +LLI VDL Sbjct: 342 MLLIAGVDL 350>NP_001177637 Length = 24 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLLITSVDL 9 LLLI +DL Sbjct: 10 LLLIREIDL 18Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.153 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 361,963 Number of extensions: 427 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |