Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000236 18 1482 NP_001120972 18 1482 XP_006716052 18 1482 XP_006716051 18 1482 NP_056121 17 4312 XP_006710574 17 4312 XP_005270746 17 4312 NP_001243657 16 5631 NP_001243656 16 5631 NP_001243655 16 5631 NP_001243654 16 5631 NP_006581 16 5631 NP_001120650 16 7355 NP_001275980 16 7355 NP_060203 16 7355 NP_001275981 16 7355 XP_006713955 16 7355 XP_005272341 16 7355 XP_005272340 16 7355 NP_115655 15 9605 NP_001094299 15 9605 XP_005247886 15 9605 XP_006713849 15 9605 XP_006711986 15 9605 XP_006711985 15 9605>NP_000236 Length = 1390 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLFILVQRS 9 LLF LVQRS Sbjct: 14 LLFTLVQRS 22>NP_001120972 Length = 1408 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLFILVQRS 9 LLF LVQRS Sbjct: 14 LLFTLVQRS 22>XP_006716052 Length = 1409 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLFILVQRS 9 LLF LVQRS Sbjct: 33 LLFTLVQRS 41>XP_006716051 Length = 1427 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LLFILVQRS 9 LLF LVQRS Sbjct: 33 LLFTLVQRS 41>NP_056121 Length = 2620 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LFILVQRS 9 LF+L+Q+S Sbjct: 512 LFVLIQKS 519>XP_006710574 Length = 2445 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LFILVQRS 9 LF+L+Q+S Sbjct: 337 LFVLIQKS 344>XP_005270746 Length = 2443 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LFILVQRS 9 LF+L+Q+S Sbjct: 337 LFVLIQKS 344>NP_001243657 Length = 462 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 166 IMFLLVQR 173>NP_001243656 Length = 487 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 191 IMFLLVQR 198>NP_001243655 Length = 488 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 269 IMFLLVQR 276>NP_001243654 Length = 565 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 269 IMFLLVQR 276>NP_006581 Length = 565 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 269 IMFLLVQR 276>NP_001120650 Length = 983 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 707 VVFVLVQR 714>NP_001275980 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 618 VVFVLVQR 625>NP_060203 Length = 975 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 699 VVFVLVQR 706>NP_001275981 Length = 850 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 574 VVFVLVQR 581>XP_006713955 Length = 861 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 585 VVFVLVQR 592>XP_005272341 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 618 VVFVLVQR 625>XP_005272340 Length = 913 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 ++F+LVQR Sbjct: 637 VVFVLVQR 644>NP_115655 Length = 1196 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FILVQR 8 FILVQR Sbjct: 990 FILVQR 995>NP_001094299 Length = 132 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LLFILVQR 8 L+F+++QR Sbjct: 56 LMFVMLQR 63>XP_005247886 Length = 1127 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FILVQR 8 FILVQR Sbjct: 990 FILVQR 995>XP_006713849 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FILVQR 8 FILVQR Sbjct: 941 FILVQR 946>XP_006711986 Length = 296 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LFILVQR 8 +F+LVQR Sbjct: 1 MFLLVQR 7>XP_006711985 Length = 296 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LFILVQR 8 +F+LVQR Sbjct: 1 MFLLVQR 7Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.352 0.162 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 343,665 Number of extensions: 468 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |