Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1935 NP_671714 18 1935 XP_006715890 18 1935 XP_005250160 18 1935 XP_005250159 18 1935 NP_619635 17 3301 NP_056372 17 4312 NP_005843 17 4312 NP_001005273 17 4312 NP_001264 17 4312 XP_006721493 17 4312 XP_006721492 17 4312 XP_006721491 17 4312 XP_006721490 17 4312 XP_006721489 17 4312 XP_006721488 17 4312 XP_005256486 17 4312 XP_005256485 17 4312 XP_006721487 17 4312 XP_006721486 17 4312 XP_005256484 17 4312 XP_006719025 17 4312 XP_005253725 17 4312 XP_006719024 17 4312 XP_006719023 17 4312 XP_006719022 17 4312 XP_006719021 17 4312 NP_001005271 17 4312 NP_001138818 16 5631 NP_055838 16 5631 NP_003732 16 5631 NP_001263181 16 5631 XP_005257123 16 5631 XP_005247908 16 5631 XP_005247907 16 5631 XP_005247906 16 5631 XP_005247905 16 5631 NP_055951 16 7355 XP_006713129 16 7355 XP_006713128 16 7355 XP_005265032 16 7355 XP_005265031 16 7355 XP_005265030 16 7355 NP_001367 15 9605 NP_001923 15 9605 NP_001002264 15 9605 NP_150280 15 9605 NP_059119 15 9605 NP_001348 15 9605 NP_942016 15 9605 NP_057535 15 9605 NP_001137534 15 9605 NP_001137533 15 9605 XP_006723937 15 9605 XP_006723936 15 9605 XP_005260286 15 9605 XP_006721980 15 9605 XP_006721978 15 9605 XP_006719959 15 9605 XP_005266654 15 9605 XP_005266653 15 9605 XP_005263119 15 9605 NP_003186 15 9605>NP_005742 Length = 3907 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LLARMGG 7 LLARMGG Sbjct: 3739 LLARMGG 3745>NP_671714 Length = 3899 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LLARMGG 7 LLARMGG Sbjct: 3731 LLARMGG 3737>XP_006715890 Length = 3860 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LLARMGG 7 LLARMGG Sbjct: 3692 LLARMGG 3698>XP_005250160 Length = 3939 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LLARMGG 7 LLARMGG Sbjct: 3771 LLARMGG 3777>XP_005250159 Length = 3952 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LLARMGG 7 LLARMGG Sbjct: 3784 LLARMGG 3790>NP_619635 Length = 1043 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 +LAR+GGS Sbjct: 29 VLARLGGS 36>NP_056372 Length = 1954 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1411 LLARVGGN 1418>NP_005843 Length = 1966 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1399 LLARVGGN 1406>NP_001005273 Length = 2000 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1399 LLARVGGN 1406>NP_001264 Length = 1912 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1403 LLARVGGN 1410>XP_006721493 Length = 2056 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1454 LLARVGGN 1461>XP_006721492 Length = 1924 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_006721491 Length = 2025 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_006721490 Length = 2036 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1379 LLARVGGN 1386>XP_006721489 Length = 2045 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_006721488 Length = 2056 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1399 LLARVGGN 1406>XP_005256486 Length = 2060 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_005256485 Length = 2080 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_006721487 Length = 2111 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1454 LLARVGGN 1461>XP_006721486 Length = 2114 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_005256484 Length = 2115 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>XP_006719025 Length = 1902 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1390 LLARVGGN 1397>XP_005253725 Length = 1905 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1396 LLARVGGN 1403>XP_006719024 Length = 1908 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1396 LLARVGGN 1403>XP_006719023 Length = 1914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1402 LLARVGGN 1409>XP_006719022 Length = 1915 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1403 LLARVGGN 1410>XP_006719021 Length = 1940 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1431 LLARVGGN 1438>NP_001005271 Length = 2059 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLARMGGS 8 LLAR+GG+ Sbjct: 1458 LLARVGGN 1465>NP_001138818 Length = 1067 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LARMGGS 8 LAR+GGS Sbjct: 213 LARIGGS 219>NP_055838 Length = 676 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LLARMGGSQ 9 LL MGG Q Sbjct: 283 LLVNMGGEQ 291>NP_003732 Length = 955 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLARMGGSQ 9 LLA +GGS+ Sbjct: 570 LLAGLGGSE 578>NP_001263181 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LLARMGGSQ 9 LL MGG Q Sbjct: 283 LLVNMGGEQ 291>XP_005257123 Length = 803 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ARMGGS 8 ARMGGS Sbjct: 209 ARMGGS 214>XP_005247908 Length = 894 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLARMGGSQ 9 LLA +GGS+ Sbjct: 597 LLAGLGGSE 605>XP_005247907 Length = 954 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLARMGGSQ 9 LLA +GGS+ Sbjct: 570 LLAGLGGSE 578>XP_005247906 Length = 981 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLARMGGSQ 9 LLA +GGS+ Sbjct: 597 LLAGLGGSE 605>XP_005247905 Length = 982 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLARMGGSQ 9 LLA +GGS+ Sbjct: 597 LLAGLGGSE 605>NP_055951 Length = 2570 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 LAR+GG + Sbjct: 1066 LARLGGQE 1073>XP_006713129 Length = 1521 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 LAR+GG + Sbjct: 1066 LARLGGQE 1073>XP_006713128 Length = 1619 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 LAR+GG + Sbjct: 1066 LARLGGQE 1073>XP_005265032 Length = 2545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 LAR+GG + Sbjct: 1066 LARLGGQE 1073>XP_005265031 Length = 2569 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 LAR+GG + Sbjct: 1066 LARLGGQE 1073>XP_005265030 Length = 2595 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 LAR+GG + Sbjct: 1066 LARLGGQE 1073>NP_001367 Length = 4646 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLARMGGS 8 L AR+GGS Sbjct: 1896 LEARLGGS 1903>NP_001923 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 350 RLGGSQ 355>NP_001002264 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 109 RLGGSQ 114>NP_150280 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 109 RLGGSQ 114>NP_059119 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 RMGG+Q Sbjct: 564 RMGGNQ 569>NP_001348 Length = 1270 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 ARMGGSQ 9 ARMGG + Sbjct: 928 ARMGGEE 934>NP_942016 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 +AR GG+Q Sbjct: 221 MARTGGTQ 228>NP_057535 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLARMGGSQ 9 LLA MG +Q Sbjct: 693 LLAAMGNTQ 701>NP_001137534 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLARMGGSQ 9 LLA MG +Q Sbjct: 693 LLAAMGNTQ 701>NP_001137533 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLARMGGSQ 9 LLA MG +Q Sbjct: 693 LLAAMGNTQ 701>XP_006723937 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 +AR GG+Q Sbjct: 221 MARTGGTQ 228>XP_006723936 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 +AR GG+Q Sbjct: 221 MARTGGTQ 228>XP_005260286 Length = 324 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 +AR GG+Q Sbjct: 248 MARTGGTQ 255>XP_006721980 Length = 383 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 148 RLGGSQ 153>XP_006721978 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 350 RLGGSQ 355>XP_006719959 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 109 RLGGSQ 114>XP_005266654 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 109 RLGGSQ 114>XP_005266653 Length = 399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 R+GGSQ Sbjct: 109 RLGGSQ 114>XP_005263119 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RMGGSQ 9 RMGG+Q Sbjct: 564 RMGGNQ 569>NP_003186 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LARMGGSQ 9 +AR GG+Q Sbjct: 248 MARTGGTQ 255Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.136 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 595,742 Number of extensions: 701 Number of successful extensions: 63 Number of sequences better than 10000.0: 63 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 63 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |