Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1935 NP_060862 18 1935 XP_005263172 18 1935 NP_036270 17 2528 NP_001074003 17 3301 XP_005254452 17 3301 XP_005254451 17 3301 NP_115548 16 5631 XP_005249939 16 5631 XP_006715854 16 5631 XP_006715853 16 5631 NP_000693 16 7355 NP_065974 16 7355 NP_001272478 16 7355 XP_006712720 16 7355 XP_006712719 16 7355 XP_005246770 16 7355 XP_005246768 16 7355 XP_005246769 16 7355 NP_001273001 15 9605 NP_001123551 15 9605 NP_612431 15 9605 NP_001138573 15 9605 NP_066014 15 9605 XP_006718727 15 9605 XP_006716107 15 9605 XP_005270926 15 9605 XP_005270927 15 9605 XP_005270925 15 9605>NP_004295 Length = 1620 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKVGSVRKL 9 LK GSVRKL Sbjct: 127 LKGGSVRKL 135>NP_060862 Length = 2104 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LKVGSVRKL 9 ++VGSVRK+ Sbjct: 1717 IRVGSVRKI 1725>XP_005263172 Length = 2104 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LKVGSVRKL 9 ++VGSVRK+ Sbjct: 1717 IRVGSVRKI 1725>NP_036270 Length = 560 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LKVGSVRKL 9 L VGS+RKL Sbjct: 51 LVVGSIRKL 59>NP_001074003 Length = 2214 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LKVGSVRKL 9 LK+G++RKL Sbjct: 176 LKLGALRKL 184>XP_005254452 Length = 2188 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LKVGSVRKL 9 LK+G++RKL Sbjct: 176 LKLGALRKL 184>XP_005254451 Length = 2214 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LKVGSVRKL 9 LK+G++RKL Sbjct: 176 LKLGALRKL 184>NP_115548 Length = 1316 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KVGSVRKL 9 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>XP_005249939 Length = 1324 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KVGSVRKL 9 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>XP_006715854 Length = 1327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KVGSVRKL 9 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>XP_006715853 Length = 1327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KVGSVRKL 9 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>NP_000693 Length = 1020 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 L GSVRK+ Sbjct: 460 LSCGSVRKM 468>NP_065974 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1793 LKVDSVRNL 1801>NP_001272478 Length = 2352 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1791 LKVDSVRNL 1799>XP_006712720 Length = 1991 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1793 LKVDSVRNL 1801>XP_006712719 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1793 LKVDSVRNL 1801>XP_005246770 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1793 LKVDSVRNL 1801>XP_005246768 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1793 LKVDSVRNL 1801>XP_005246769 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKVGSVRKL 9 LKV SVR L Sbjct: 1793 LKVDSVRNL 1801>NP_001273001 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKVGSVRK 8 LKVGSV + Sbjct: 804 LKVGSVEE 811>NP_001123551 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKVGSVRK 8 LKVGSV + Sbjct: 860 LKVGSVEE 867>NP_612431 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKVGSVRKL 9 ++ G+VRKL Sbjct: 276 VRAGAVRKL 284>NP_001138573 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKVGSVRKL 9 LK+ ++RKL Sbjct: 81 LKISTLRKL 89>NP_066014 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKVGSVRK 8 LKVGSV + Sbjct: 860 LKVGSVEE 867>XP_006718727 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKVGSVRKL 9 LK+ ++RKL Sbjct: 81 LKISTLRKL 89>XP_006716107 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KVGSVRK 8 K+GSVR+ Sbjct: 566 KIGSVRE 572>XP_005270926 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKVGSVRK 8 LKVGSV + Sbjct: 804 LKVGSVEE 811>XP_005270927 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKVGSVRK 8 LKVGSV + Sbjct: 804 LKVGSVEE 811>XP_005270925 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKVGSVRK 8 LKVGSV + Sbjct: 860 LKVGSVEE 867Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.141 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 427,428 Number of extensions: 524 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |