Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_997464 17 3301 NP_001139320 16 5631 NP_001139321 16 5631 NP_001139323 16 5631 NP_006008 16 5631 NP_001139322 16 5631 NP_001139324 16 5631 NP_001139319 16 5631 XP_006726646 16 5631 XP_006714037 16 5631 XP_005248253 16 5631 XP_005248252 16 5631 XP_006714036 16 5631 NP_001065 16 7355 NP_001274275 16 7355 NP_055467 16 7355 NP_001070913 16 7355 NP_001130029 16 7355 NP_001130030 16 7355 NP_055685 16 7355 NP_055550 16 7355 NP_066962 16 7355 XP_005265757 16 7355 XP_003846672 16 7355 NP_001077090 16 7355 NP_066011 16 7355 NP_060058 15 9605 NP_438172 15 9605 NP_542399 15 9605 NP_663624 15 9605 NP_060453 15 9605 XP_005257554 15 9605 XP_005272220 15 9605 XP_006715117 15 9605 XP_006715116 15 9605 XP_006715115 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLLDETA 9 LKTL+DETA Sbjct: 303 LKTLVDETA 311>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLLDETA 9 LKTL+DETA Sbjct: 98 LKTLVDETA 106>NP_997464 Length = 320 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LKTLLDETA 9 L+TLLD++A Sbjct: 278 LRTLLDQSA 286>NP_001139320 Length = 856 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>NP_001139321 Length = 842 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 201 LRTLLNET 208>NP_001139323 Length = 833 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>NP_006008 Length = 865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 201 LRTLLNET 208>NP_001139322 Length = 834 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 201 LRTLLNET 208>NP_001139324 Length = 825 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>NP_001139319 Length = 856 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>XP_006726646 Length = 453 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KTLLDETA 9 KTLL+E+A Sbjct: 19 KTLLEESA 26Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KTLLDETA 9 KTLL+E+A Sbjct: 161 KTLLEESA 168>XP_006714037 Length = 787 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 123 LRTLLNET 130>XP_005248253 Length = 825 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>XP_005248252 Length = 833 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>XP_006714036 Length = 856 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LKTLLDET 8 L+TLL+ET Sbjct: 192 LRTLLNET 199>NP_001065 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 +KT+LDE Sbjct: 39 IKTILDE 45>NP_001274275 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKTLLDETA 9 L LLDETA Sbjct: 289 LYQLLDETA 297>NP_055467 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKTLLDETA 9 +KTLLD+ A Sbjct: 713 VKTLLDDFA 721>NP_001070913 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 +KT+LDE Sbjct: 346 MKTILDE 352>NP_001130029 Length = 600 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKTLLDETA 9 L LLDETA Sbjct: 526 LYQLLDETA 534>NP_001130030 Length = 571 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKTLLDETA 9 L LLDETA Sbjct: 497 LYQLLDETA 505>NP_055685 Length = 1239 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 KTLLDET 8 KTLLD T Sbjct: 50 KTLLDNT 56>NP_055550 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 +KT+LDE Sbjct: 346 MKTILDE 352>NP_066962 Length = 528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 +KT+LDE Sbjct: 39 IKTILDE 45>XP_005265757 Length = 369 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 +KT+LDE Sbjct: 39 IKTILDE 45>XP_003846672 Length = 830 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKTLLDETA 9 +KTLLD+ A Sbjct: 713 VKTLLDDFA 721>NP_001077090 Length = 1239 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 KTLLDET 8 KTLLD T Sbjct: 50 KTLLDNT 56>NP_066011 Length = 552 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKTLLDETA 9 L LLDETA Sbjct: 478 LYQLLDETA 486>NP_060058 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 LKTL+D+ Sbjct: 206 LKTLIDD 212>NP_438172 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 LKTL+D+ Sbjct: 206 LKTLIDD 212>NP_542399 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKTLLDETA 9 LKT LDE A Sbjct: 226 LKTELDEWA 234>NP_663624 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKTLLDE 7 LKT LDE Sbjct: 65 LKTTLDE 71>NP_060453 Length = 446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKTLLD 6 LKTLLD Sbjct: 132 LKTLLD 137>XP_005257554 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKTLLD 6 LKTLLD Sbjct: 50 LKTLLD 55>XP_005272220 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LKTLLDE 7 LKTL+D+ Sbjct: 206 LKTLIDD 212>XP_006715117 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKTLLDE 7 LKT LDE Sbjct: 65 LKTTLDE 71>XP_006715116 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKTLLDE 7 LKT LDE Sbjct: 65 LKTTLDE 71>XP_006715115 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKTLLDE 7 LKT LDE Sbjct: 65 LKTTLDE 71Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.127 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 484,266 Number of extensions: 806 Number of successful extensions: 39 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |