Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 20 509 XP_006718907 20 509 XP_006718906 20 509 XP_005271619 20 509 XP_005271618 20 509 NP_078966 17 4312 XP_006723004 17 4312 NP_647479 16 7355 NP_758963 16 7355 NP_078930 16 7355 NP_055184 16 7355 NP_001135842 16 7355 NP_005427 16 7355 XP_006712480 16 7355 XP_006712479 16 7355 XP_006712478 16 7355 NP_005319 15 9605 NP_443137 15 9605 NP_001186209 15 9605 NP_005320 15 9605 NP_056169 15 9605 NP_001094064 15 9605 NP_079040 15 9605 NP_060549 15 9605 NP_060189 15 9605 XP_005255978 15 9605 XP_005255977 15 9605 XP_005265303 15 9605 XP_005265302 15 9605 XP_005246323 15 9605 XP_005246322 15 9605 XP_006712291 15 9605 XP_005246320 15 9605 XP_005264455 15 9605>NP_000042 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLAVNFQ 9 LKTLAVNF+ Sbjct: 240 LKTLAVNFR 248>XP_006718907 Length = 3050 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLAVNFQ 9 LKTLAVNF+ Sbjct: 240 LKTLAVNFR 248>XP_006718906 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLAVNFQ 9 LKTLAVNF+ Sbjct: 240 LKTLAVNFR 248>XP_005271619 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLAVNFQ 9 LKTLAVNF+ Sbjct: 240 LKTLAVNFR 248>XP_005271618 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LKTLAVNFQ 9 LKTLAVNF+ Sbjct: 240 LKTLAVNFR 248>NP_078966 Length = 14507 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL +NF Sbjct: 14074 LKTLTLNF 14081>XP_006723004 Length = 6443 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL +NF Sbjct: 6010 LKTLTLNF 6017>NP_647479 Length = 988 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+ LAV FQ Sbjct: 559 LRALAVEFQ 567>NP_758963 Length = 611 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+ LAV FQ Sbjct: 559 LRALAVEFQ 567>NP_078930 Length = 702 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LKTLAVNF 8 LKT VNF Sbjct: 227 LKTATVNF 234>NP_055184 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+TL V FQ Sbjct: 173 LRTLKVTFQ 181>NP_001135842 Length = 353 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+TL V FQ Sbjct: 66 LRTLKVTFQ 74>NP_005427 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTLAVNFQ 9 +TLAVN++ Sbjct: 128 ETLAVNYE 135>XP_006712480 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+TL V FQ Sbjct: 173 LRTLKVTFQ 181>XP_006712479 Length = 357 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+TL V FQ Sbjct: 66 LRTLKVTFQ 74>XP_006712478 Length = 451 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKTLAVNFQ 9 L+TL V FQ Sbjct: 160 LRTLKVTFQ 168>NP_005319 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KTLAVNF 8 KT+ VNF Sbjct: 469 KTIVVNF 475>NP_443137 Length = 1092 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL V+F Sbjct: 725 LKTLPVDF 732>NP_001186209 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KTLAVNF 8 KT+ VNF Sbjct: 472 KTIVVNF 478>NP_005320 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KTLAVNF 8 KT+ VNF Sbjct: 472 KTIVVNF 478>NP_056169 Length = 1749 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LKTLAVNF 8 LKTL NF Sbjct: 1408 LKTLRYNF 1415>NP_001094064 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KTLAVNFQ 9 KT++VN Q Sbjct: 738 KTISVNIQ 745>NP_079040 Length = 1116 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LKTLAVNFQ 9 +KTL +N++ Sbjct: 862 IKTLPINYR 870>NP_060549 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 +KTL +NF Sbjct: 581 IKTLLLNF 588>NP_060189 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KTLAVNFQ 9 KT++VN Q Sbjct: 738 KTISVNIQ 745>XP_005255978 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KTLAVNF 8 KT+ VNF Sbjct: 472 KTIVVNF 478>XP_005255977 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KTLAVNF 8 KT+ VNF Sbjct: 472 KTIVVNF 478>XP_005265303 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KTLAVNFQ 9 KT++VN Q Sbjct: 738 KTISVNIQ 745>XP_005265302 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KTLAVNFQ 9 KT++VN Q Sbjct: 738 KTISVNIQ 745>XP_005246323 Length = 1069 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL V+F Sbjct: 725 LKTLPVDF 732>XP_005246322 Length = 1084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL V+F Sbjct: 725 LKTLPVDF 732>XP_006712291 Length = 1086 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL V+F Sbjct: 725 LKTLPVDF 732>XP_005246320 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 LKTL V+F Sbjct: 725 LKTLPVDF 732>XP_005264455 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LKTLAVNF 8 +KTL +NF Sbjct: 581 IKTLLLNF 588Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.135 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 338,603 Number of extensions: 491 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |