Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 4312 XP_006716142 17 4312 XP_005250088 17 4312 XP_006716141 17 4312 XP_005250085 17 4312 XP_006716140 17 4312 XP_005250084 17 4312 XP_005250083 17 4312 XP_005250082 17 4312 NP_055244 16 5631 NP_002967 16 5631 XP_005247419 16 5631 XP_006712745 16 5631 XP_006712744 16 5631 XP_006712743 16 5631 NP_062815 15 9605 NP_001137140 15 9605 NP_862830 15 9605 NP_001245215 15 9605 NP_055680 15 9605 NP_057129 15 9605 NP_001269358 15 9605 NP_001245216 15 9605 NP_775785 15 9605 XP_005268894 15 9605 XP_006714605 15 9605 XP_006714604 15 9605 XP_006714603 15 9605 XP_006714602 15 9605 XP_006714601 15 9605 XP_006714600 15 9605>NP_733751 Length = 4911 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 912 LKSGIGAVV 920>XP_006716142 Length = 4927 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>XP_005250088 Length = 4928 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>XP_006716141 Length = 4959 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>XP_005250085 Length = 4979 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>XP_006716140 Length = 4982 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>XP_005250084 Length = 4982 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>XP_005250083 Length = 4982 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 912 LKSGIGAVV 920>XP_005250082 Length = 4983 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKS IGAVV Sbjct: 913 LKSGIGAVV 921>NP_055244 Length = 984 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKSL+GA V Sbjct: 389 LKSLLGAGV 397>NP_002967 Length = 1682 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKSL+G ++ Sbjct: 223 LKSLVGVLI 231>XP_005247419 Length = 1014 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKSL+GA V Sbjct: 389 LKSLLGAGV 397>XP_006712745 Length = 1682 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKSL+G ++ Sbjct: 223 LKSLVGVLI 231>XP_006712744 Length = 1682 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKSL+G ++ Sbjct: 223 LKSLVGVLI 231>XP_006712743 Length = 1682 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 LKSL+G ++ Sbjct: 223 LKSLVGVLI 231>NP_062815 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L S++GAV+ Sbjct: 390 LVSIVGAVI 398>NP_001137140 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L +L+GAVV Sbjct: 8 LPTLLGAVV 16>NP_862830 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L +L+GAVV Sbjct: 8 LPTLLGAVV 16>NP_001245215 Length = 498 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 143 LVSLIGAMI 151>NP_055680 Length = 1401 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 +KS++G +V Sbjct: 271 MKSIVGEIV 279>NP_057129 Length = 194 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LKSLIGA 7 +KSLIGA Sbjct: 65 VKSLIGA 71>NP_001269358 Length = 437 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 82 LVSLIGAMI 90>NP_001245216 Length = 498 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 179 LVSLIGAMI 187>NP_775785 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214>XP_005268894 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L +L+GAVV Sbjct: 8 LPTLLGAVV 16>XP_006714605 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214>XP_006714604 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214>XP_006714603 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214>XP_006714602 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214>XP_006714601 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214>XP_006714600 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSLIGAVV 9 L SLIGA++ Sbjct: 206 LVSLIGAMI 214Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.144 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 310,603 Number of extensions: 329 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |