Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002345 17 2528 NP_733751 17 3301 XP_006716142 17 3301 XP_005250088 17 3301 XP_006716141 17 3301 XP_005250085 17 3301 XP_006716140 17 3301 XP_005250084 17 3301 XP_005250083 17 3301 XP_005250082 17 3301 NP_001150 17 4312 NP_951059 15 9605 NP_060119 15 9605 NP_951058 15 9605 NP_000433 15 9605 NP_115690 15 9605 XP_005276940 15 9605 XP_005276939 15 9605 XP_005276938 15 9605 XP_005276937 15 9605 XP_006722008 15 9605 XP_006722007 15 9605 XP_006719702 15 9605 XP_006717971 15 9605 XP_005269990 15 9605 NP_076943 15 9605>NP_002345 Length = 314 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LKSGIVAVV 9 LK+G++AV+ Sbjct: 264 LKAGVIAVI 272>NP_733751 Length = 4911 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 912 LKSGIGAVV 920>XP_006716142 Length = 4927 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250088 Length = 4928 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_006716141 Length = 4959 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250085 Length = 4979 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_006716140 Length = 4982 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250084 Length = 4982 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250083 Length = 4982 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 912 LKSGIGAVV 920>XP_005250082 Length = 4983 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>NP_001150 Length = 1338 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LKSGIVAVV 9 LK+GI+A V Sbjct: 812 LKTGIIAAV 820>NP_951059 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SGIVAVV 9 SG+VAVV Sbjct: 340 SGLVAVV 346>NP_060119 Length = 875 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SGIVAVV 9 SG+VAVV Sbjct: 340 SGLVAVV 346>NP_951058 Length = 853 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SGIVAVV 9 SG+VAVV Sbjct: 340 SGLVAVV 346>NP_000433 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>NP_115690 Length = 327 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKSGIVAV 8 L SGIVA+ Sbjct: 314 LTSGIVAI 321>XP_005276940 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>XP_005276939 Length = 717 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>XP_005276938 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>XP_005276937 Length = 727 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>XP_006722008 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>XP_006722007 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KSGIVAVV 9 K G++AVV Sbjct: 600 KKGLIAVV 607>XP_006719702 Length = 246 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKSGIVAV 8 L SGIVA+ Sbjct: 233 LTSGIVAI 240>XP_006717971 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SGIVAVV 9 SG+VAVV Sbjct: 340 SGLVAVV 346>XP_005269990 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SGIVAVV 9 SG+VAVV Sbjct: 340 SGLVAVV 346>NP_076943 Length = 176 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LKSGIVA 7 LK+GIVA Sbjct: 127 LKTGIVA 133Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.140 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 382,309 Number of extensions: 469 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |