Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 2528 NP_002310 17 2528 NP_001276863 17 2528 XP_006716142 17 2528 XP_005250088 17 2528 XP_006716141 17 2528 XP_005250085 17 2528 XP_006716140 17 2528 XP_005250084 17 2528 XP_005250083 17 2528 XP_005250082 17 2528 XP_005250403 17 2528 NP_001120926 16 7355 NP_001120925 16 7355 NP_004394 16 7355 XP_005256599 16 7355 NP_877963 15 9605 NP_002651 15 9605 NP_821075 15 9605 NP_443083 15 9605 NP_821074 15 9605 NP_001230405 15 9605 NP_004163 15 9605 NP_004161 15 9605 NP_001160167 15 9605 NP_001276868 15 9605 NP_001276869 15 9605 NP_064505 15 9605 NP_071903 15 9605 XP_005260495 15 9605 XP_006719952 15 9605 XP_006719951 15 9605 XP_005266643 15 9605 XP_005249615 15 9605 XP_005249612 15 9605 XP_006714551 15 9605 XP_005248399 15 9605 XP_006712699 15 9605 XP_006712698 15 9605 XP_006712697 15 9605>NP_733751 Length = 4911 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 912 LKSGIGAVV 920>NP_002310 Length = 683 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LK G+RAVV Sbjct: 434 LKPGLRAVV 442>NP_001276863 Length = 652 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LK G+RAVV Sbjct: 434 LKPGLRAVV 442>XP_006716142 Length = 4927 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250088 Length = 4928 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_006716141 Length = 4959 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250085 Length = 4979 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_006716140 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250084 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250083 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 912 LKSGIGAVV 920>XP_005250082 Length = 4983 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKSGI AVV Sbjct: 913 LKSGIGAVV 921>XP_005250403 Length = 644 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LK G+RAVV Sbjct: 395 LKPGLRAVV 403>NP_001120926 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKS ++AV+ Sbjct: 298 LKSSVKAVI 306>NP_001120925 Length = 496 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKS ++AV+ Sbjct: 462 LKSSVKAVI 470>NP_004394 Length = 496 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKSGIRAVV 9 LKS ++AV+ Sbjct: 462 LKSSVKAVI 470>XP_005256599 Length = 739 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K+GIRA V Sbjct: 12 KAGIRAAV 19>NP_877963 Length = 1290 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKSGIRAV 8 LK+G RAV Sbjct: 1183 LKTGYRAV 1190>NP_002651 Length = 1291 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKSGIRAV 8 LK+G RAV Sbjct: 1183 LKTGYRAV 1190>NP_821075 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 1033 LLGGVRAVV 1041>NP_443083 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 923 LLGGVRAVV 931>NP_821074 Length = 1113 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 1041 LLGGVRAVV 1049>NP_001230405 Length = 1078 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 1006 LLGGVRAVV 1014>NP_004163 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 118 KMGMRAVV 125>NP_004161 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 89 KIGLRAVV 96>NP_001160167 Length = 497 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 118 KMGMRAVV 125>NP_001276868 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 72 KMGMRAVV 79>NP_001276869 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 118 KMGMRAVV 125>NP_064505 Length = 1555 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 LK G RAV+ Sbjct: 886 LKKGQRAVI 894>NP_071903 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKSGIRA 7 LK GIRA Sbjct: 139 LKKGIRA 145>XP_005260495 Length = 1330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKSGIRAV 8 LK+G RAV Sbjct: 1222 LKTGYRAV 1229>XP_006719952 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 923 LLGGVRAVV 931>XP_006719951 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 923 LLGGVRAVV 931>XP_005266643 Length = 1098 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 L G+RAVV Sbjct: 1026 LLGGVRAVV 1034>XP_005249615 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKSGIRA 7 LK GIRA Sbjct: 139 LKKGIRA 145>XP_005249612 Length = 436 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LKSGIRA 7 LK GIRA Sbjct: 139 LKKGIRA 145>XP_006714551 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 118 KMGMRAVV 125>XP_005248399 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KSGIRAVV 9 K G+RAVV Sbjct: 118 KMGMRAVV 125>XP_006712699 Length = 1544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 LK G RAV+ Sbjct: 875 LKKGQRAVI 883>XP_006712698 Length = 1547 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 LK G RAV+ Sbjct: 878 LKKGQRAVI 886>XP_006712697 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKSGIRAVV 9 LK G RAV+ Sbjct: 880 LKKGQRAVI 888Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.141 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 357,896 Number of extensions: 304 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |