Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005654 17 2528 XP_006713980 17 2528 XP_006713979 17 2528 NP_001119600 17 4312 NP_653309 17 4312 NP_056207 17 4312 NP_060343 16 5631 NP_821066 16 5631 NP_001189332 16 5631 NP_002224 16 5631 NP_689544 16 5631 NP_001139754 16 5631 XP_005255186 16 5631 XP_005268081 16 5631 XP_006720097 16 5631 NP_003127 16 5631 NP_777563 16 5631 NP_001136272 16 7355 NP_001159859 16 7355 NP_005358 16 7355 NP_001159858 16 7355 NP_001019626 16 7355 NP_689838 16 7355 NP_000339 15 9605 NP_000672 15 9605 NP_001139784 15 9605 NP_705832 15 9605 NP_001269667 15 9605 NP_689585 15 9605 NP_003728 15 9605 NP_001269668 15 9605 NP_001269670 15 9605 NP_001269669 15 9605 NP_001269671 15 9605 NP_110385 15 9605 NP_001138573 15 9605 XP_005276505 15 9605 XP_006724272 15 9605 XP_006724271 15 9605 XP_006724270 15 9605 XP_006724269 15 9605 XP_006724268 15 9605 XP_006724267 15 9605 XP_005256920 15 9605 XP_005268309 15 9605 XP_006718727 15 9605 XP_005253264 15 9605 XP_003403748 15 9605 NP_000979 15 9605 NP_689968 15 9605 NP_619635 15 9605>NP_005654 Length = 539 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LKR A VPF Sbjct: 200 LKRSAGVPF 208>XP_006713980 Length = 458 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LKR A VPF Sbjct: 119 LKRSAGVPF 127>XP_006713979 Length = 564 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LKR A VPF Sbjct: 225 LKRSAGVPF 233>NP_001119600 Length = 129 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KRKARVPF 9 KRK VPF Sbjct: 91 KRKKEVPF 98>NP_653309 Length = 1434 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LKRKARVPF 9 LK+K +VP+ Sbjct: 329 LKKKMKVPY 337>NP_056207 Length = 325 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 LKR+AR P Sbjct: 50 LKRRARCP 57>NP_060343 Length = 421 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 L+RKA PF Sbjct: 56 LERKAHSPF 64>NP_821066 Length = 197 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 L+RKA PF Sbjct: 56 LERKAHSPF 64>NP_001189332 Length = 392 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 L+RKA PF Sbjct: 56 LERKAHSPF 64>NP_002224 Length = 653 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LKRKARVPF 9 LKR VPF Sbjct: 241 LKRPVNVPF 249>NP_689544 Length = 421 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LKR ++PF Sbjct: 94 LKRDVQIPF 102>NP_001139754 Length = 455 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KARVPF 9 KAR+PF Sbjct: 105 KARIPF 110>XP_005255186 Length = 254 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 LKR AR+P Sbjct: 36 LKRPARLP 43>XP_005268081 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KARVPF 9 KAR+PF Sbjct: 154 KARIPF 159>XP_006720097 Length = 167 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LKR ++PF Sbjct: 94 LKRDVQIPF 102>NP_003127 Length = 504 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KARVPF 9 KAR+PF Sbjct: 154 KARIPF 159>NP_777563 Length = 245 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 LKR AR+P Sbjct: 27 LKRPARLP 34>NP_001136272 Length = 3144 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RKARVPF 9 R+AR PF Sbjct: 1387 RRARTPF 1393>NP_001159859 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LK +AR PF Sbjct: 122 LKYRAREPF 130>NP_005358 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LK +AR PF Sbjct: 122 LKYRAREPF 130>NP_001159858 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LKRKARVPF 9 LK +AR PF Sbjct: 122 LKYRAREPF 130>NP_001019626 Length = 569 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 ++RK RVP Sbjct: 307 IERKVRVP 314>NP_689838 Length = 744 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KRKARVP 8 KR+A+VP Sbjct: 596 KRRAKVP 602>NP_000339 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RKARVPF 9 RKA +PF Sbjct: 246 RKALIPF 252>NP_000672 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 KRKARVP 8 KR+ RVP Sbjct: 239 KRRTRVP 245>NP_001139784 Length = 986 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKRKAR 6 LKRKAR Sbjct: 64 LKRKAR 69>NP_705832 Length = 938 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKRKAR 6 LKRKAR Sbjct: 64 LKRKAR 69>NP_001269667 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 341 VKRRVRIP 348>NP_689585 Length = 1437 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 6/8 (75%) Query: 2 KRKARVPF 9 +RK +PF Sbjct: 474 RRKTEIPF 481>NP_003728 Length = 3298 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KARVPF 9 +ARVPF Sbjct: 2768 RARVPF 2773>NP_001269668 Length = 915 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 506 VKRRVRIP 513>NP_001269670 Length = 659 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 249 VKRRVRIP 256>NP_001269669 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 140 VKRRVRIP 147>NP_001269671 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 51 VKRRVRIP 58>NP_110385 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 507 VKRRVRIP 514>NP_001138573 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKRKAR 6 LKRKAR Sbjct: 207 LKRKAR 212>XP_005276505 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LKRKARVPF 9 +KR R PF Sbjct: 94 VKRDVRTPF 102>XP_006724272 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 141 VKRRVRIP 148>XP_006724271 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 52 VKRRVRIP 59>XP_006724270 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 141 VKRRVRIP 148>XP_006724269 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 230 VKRRVRIP 237>XP_006724268 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 333 VKRRVRIP 340>XP_006724267 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 +KR+ R+P Sbjct: 334 VKRRVRIP 341>XP_005256920 Length = 943 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKRKAR 6 LKRKAR Sbjct: 64 LKRKAR 69>XP_005268309 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LKRKARVPF 9 +KR R PF Sbjct: 94 VKRDVRTPF 102>XP_006718727 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKRKAR 6 LKRKAR Sbjct: 207 LKRKAR 212>XP_005253264 Length = 3443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KARVPF 9 +ARVPF Sbjct: 2913 RARVPF 2918>XP_003403748 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 L+R+AR P Sbjct: 85 LRREARAP 92>NP_000979 Length = 136 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LKRKAR 6 LKRKAR Sbjct: 106 LKRKAR 111>NP_689968 Length = 248 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KRKARVPF 9 KRK VP+ Sbjct: 72 KRKRHVPY 79>NP_619635 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LKRKARVP 8 L+R+AR P Sbjct: 131 LRREARAP 138Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.147 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 524,089 Number of extensions: 989 Number of successful extensions: 51 Number of sequences better than 10000.0: 51 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 51 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |