Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_001093320 17 4312 NP_001093260 17 4312 NP_001094101 17 4312 NP_055105 17 4312 XP_006717089 17 4312 XP_006717088 17 4312 NP_001008781 16 5631 XP_006718827 16 5631 NP_037498 16 7355 NP_001128649 16 7355 NP_001128647 16 7355 NP_690869 16 7355 XP_006719300 16 7355 XP_006719299 16 7355 XP_005268701 16 7355 NP_001128648 16 7355 NP_003728 15 9605 NP_079446 15 9605 NP_079146 15 9605 NP_542415 15 9605 NP_542416 15 9605 NP_542414 15 9605 NP_006255 15 9605 NP_001348 15 9605 NP_689481 15 9605 NP_620711 15 9605 NP_057305 15 9605 NP_057396 15 9605 NP_006323 15 9605 XP_005253264 15 9605 XP_005268514 15 9605 XP_005263224 15 9605 XP_005247007 15 9605 NP_001129115 15 9605 NP_001129116 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LITPLQAV 8 LITPLQAV Sbjct: 2790 LITPLQAV 2797>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LITPLQAV 8 LITPLQAV Sbjct: 2790 LITPLQAV 2797>NP_001093320 Length = 479 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQA Sbjct: 429 LLTPLQA 435>NP_001093260 Length = 479 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQA Sbjct: 429 LLTPLQA 435>NP_001094101 Length = 481 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQA Sbjct: 431 LLTPLQA 437>NP_055105 Length = 1098 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITPLQAVD 9 ITP+QAV+ Sbjct: 508 ITPVQAVN 515>XP_006717089 Length = 653 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITPLQAVD 9 ITP+QAV+ Sbjct: 63 ITPVQAVN 70>XP_006717088 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITPLQAVD 9 ITP+QAV+ Sbjct: 434 ITPVQAVN 441>NP_001008781 Length = 4557 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LITPLQAVD 9 L+T +QA+D Sbjct: 2618 LVTQVQAID 2626Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LITPLQAVD 9 L+T +QAVD Sbjct: 3149 LLTRVQAVD 3157>XP_006718827 Length = 3479 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LITPLQAVD 9 L+T +QA+D Sbjct: 1508 LVTQVQAID 1516Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LITPLQAVD 9 L+T +QAVD Sbjct: 2039 LLTRVQAVD 2047>NP_037498 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ITPLQAV 8 +TP+QAV Sbjct: 659 VTPVQAV 665>NP_001128649 Length = 571 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 160 TPLTAVD 166>NP_001128647 Length = 667 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 256 TPLTAVD 262>NP_690869 Length = 660 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 249 TPLTAVD 255>XP_006719300 Length = 571 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 160 TPLTAVD 166>XP_006719299 Length = 660 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 249 TPLTAVD 255>XP_005268701 Length = 667 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 256 TPLTAVD 262>NP_001128648 Length = 660 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TPLQAVD 9 TPL AVD Sbjct: 249 TPLTAVD 255>NP_003728 Length = 3298 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LITPLQAVD 9 L+T LQA D Sbjct: 1235 LVTTLQAKD 1243Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LITPLQAVD 9 L+T L A+D Sbjct: 2724 LVTTLHAID 2732>NP_079446 Length = 979 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LITPLQAV 8 L+TP+Q + Sbjct: 166 LVTPIQRI 173>NP_079146 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LITPLQAV 8 L+TP+Q + Sbjct: 166 LVTPIQRI 173>NP_542415 Length = 2294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQ+ Sbjct: 1409 LLTPLQS 1415>NP_542416 Length = 2490 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQ+ Sbjct: 1605 LLTPLQS 1611>NP_542414 Length = 2485 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQ+ Sbjct: 1600 LLTPLQS 1606>NP_006255 Length = 2466 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQ+ Sbjct: 1581 LLTPLQS 1587>NP_001348 Length = 1270 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LITPLQ 6 L+TPLQ Sbjct: 1061 LVTPLQ 1066>NP_689481 Length = 475 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LITPLQAV 8 L+TP+Q V Sbjct: 468 LLTPVQTV 475>NP_620711 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ITPLQA 7 +TPLQA Sbjct: 258 VTPLQA 263>NP_057305 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 ITPLQAVD 9 I P QAVD Sbjct: 216 IEPAQAVD 223>NP_057396 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ITPLQAV 8 +TPLQA+ Sbjct: 327 LTPLQAM 333>NP_006323 Length = 250 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TPLQAVD 9 +PLQA+D Sbjct: 27 SPLQALD 33>XP_005253264 Length = 3443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LITPLQAVD 9 L+T LQA D Sbjct: 1380 LVTTLQAKD 1388Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LITPLQAVD 9 L+T L A+D Sbjct: 2869 LVTTLHAID 2877>XP_005268514 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 ITPLQAVD 9 I P QAVD Sbjct: 73 IEPAQAVD 80>XP_005263224 Length = 2491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LITPLQA 7 L+TPLQ+ Sbjct: 1606 LLTPLQS 1612>XP_005247007 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ITPLQA 7 +TPLQA Sbjct: 258 VTPLQA 263>NP_001129115 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 ITPLQAVD 9 I P QAVD Sbjct: 223 IEPAQAVD 230>NP_001129116 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 ITPLQAVD 9 I P QAVD Sbjct: 159 IEPAQAVD 166Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.141 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 541,817 Number of extensions: 767 Number of successful extensions: 41 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |