Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 17 4312 NP_001269470 16 7355 NP_003167 16 7355 NP_001269471 16 7355 XP_005271213 16 7355 XP_005271212 16 7355 XP_005271211 16 7355 XP_006710922 16 7355 NP_001008504 15 9605 NP_001008503 15 9605 NP_001272452 15 9605 NP_001138751 15 9605 NP_001138754 15 9605 NP_001272451 15 9605 NP_001138757 15 9605 NP_001138755 15 9605 NP_001008505 15 9605 NP_001272453 15 9605 NP_001138756 15 9605 NP_001138758 15 9605 NP_000905 15 9605 NP_075463 15 9605 NP_079002 15 9605 NP_001257514 15 9605 NP_001257513 15 9605 XP_006719812 15 9605 XP_006715560 15 9605 XP_006715559 15 9605 NP_829884 15 9605 NP_829883 15 9605>NP_005350 Length = 552 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LITAITT 7 LITAITT Sbjct: 57 LITAITT 63>NP_001269470 Length = 976 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 485 LTAITTSE 492>NP_003167 Length = 976 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 485 LTAITTSE 492>NP_001269471 Length = 951 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 485 LTAITTSE 492>XP_005271213 Length = 921 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 430 LTAITTSE 437>XP_005271212 Length = 958 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 467 LTAITTSE 474>XP_005271211 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 482 LTAITTSE 489>XP_006710922 Length = 976 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITAITTME 9 +TAITT E Sbjct: 485 LTAITTSE 492>NP_001008504 Length = 392 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001008503 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001272452 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001138751 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 160 MITAITIM 167>NP_001138754 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001272451 Length = 97 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001138757 Length = 389 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001138755 Length = 397 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001008505 Length = 446 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001272453 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 160 MITAITIM 167>NP_001138756 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_001138758 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_000905 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 67 MITAITIM 74>NP_075463 Length = 3013 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 LIT ITT+ Sbjct: 430 LITIITTL 437>NP_079002 Length = 822 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITAITTM 8 ITAIT+M Sbjct: 773 ITAITSM 779>NP_001257514 Length = 830 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITAITTM 8 ITAIT+M Sbjct: 781 ITAITSM 787>NP_001257513 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITAITTM 8 ITAIT+M Sbjct: 732 ITAITSM 738>XP_006719812 Length = 3019 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 LIT ITT+ Sbjct: 427 LITIITTL 434>XP_006715560 Length = 197 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 129 MITAITIM 136>XP_006715559 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LITAITTM 8 +ITAIT M Sbjct: 160 MITAITIM 167>NP_829884 Length = 1116 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TAITTME 9 TA+TT+E Sbjct: 613 TALTTLE 619>NP_829883 Length = 1088 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TAITTME 9 TA+TT+E Sbjct: 585 TALTTLE 591Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.127 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 286,335 Number of extensions: 361 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |