Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_689417 18 1935 XP_006720248 18 1935 XP_005267848 18 1935 NP_060413 18 1935 NP_443099 17 4312 XP_006720008 17 4312 XP_006720007 17 4312 XP_006720006 17 4312 NP_001006623 15 9605 NP_839955 15 9605 NP_001020095 15 9605 XP_005265807 15 9605 XP_006714105 15 9605 XP_005265805 15 9605 XP_005265804 15 9605 NP_060731 15 9605>NP_689417 Length = 711 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IMIKLFRL 9 IM+K+FRL Sbjct: 582 IMVKIFRL 589>XP_006720248 Length = 711 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IMIKLFRL 9 IM+K+FRL Sbjct: 582 IMVKIFRL 589>XP_005267848 Length = 711 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IMIKLFRL 9 IM+K+FRL Sbjct: 582 IMVKIFRL 589>NP_060413 Length = 711 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IMIKLFRL 9 IM+K+FRL Sbjct: 582 IMVKIFRL 589>NP_443099 Length = 1738 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LIMIKLFRL 9 LIMI+ FR+ Sbjct: 148 LIMIRAFRI 156>XP_006720008 Length = 1645 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LIMIKLFRL 9 LIMI+ FR+ Sbjct: 148 LIMIRAFRI 156>XP_006720007 Length = 1709 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LIMIKLFRL 9 LIMI+ FR+ Sbjct: 148 LIMIRAFRI 156>XP_006720006 Length = 1713 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LIMIKLFRL 9 LIMI+ FR+ Sbjct: 148 LIMIRAFRI 156>NP_001006623 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LIMIKLF 7 ++M+KLF Sbjct: 221 IVMVKLF 227>NP_839955 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 567 MMIKIFR 573>NP_001020095 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 582 MMIKIFR 588>XP_005265807 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 567 MMIKIFR 573>XP_006714105 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 585 MMIKIFR 591>XP_005265805 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 600 MMIKIFR 606>XP_005265804 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 600 MMIKIFR 606>NP_060731 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IMIKLFR 8 +MIK+FR Sbjct: 582 MMIKIFR 588Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.366 0.178 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 250,389 Number of extensions: 212 Number of successful extensions: 16 Number of sequences better than 10000.0: 16 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 16 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |