Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004324 18 1135 XP_005250103 18 1135 XP_005250102 18 1135 NP_000866 16 5631 NP_940912 16 5631 NP_203751 16 5631 NP_001243497 16 5631 NP_003612 16 5631 NP_001243498 16 5631 XP_005254953 16 5631 XP_006720550 16 5631 XP_006720549 16 5631 XP_006718416 16 5631 XP_006718415 16 5631 XP_006718414 16 5631 XP_006718413 16 5631 XP_005253234 16 5631 XP_006718412 16 5631 XP_005253233 16 5631 XP_005253232 16 5631 XP_005253231 16 5631 XP_006714457 16 5631 XP_006714456 16 5631 XP_005263376 16 5631 NP_940906 16 5631 NP_579872 16 7355 NP_001693 16 7355 XP_005251072 16 7355 XP_006710853 16 7355 XP_006710852 16 7355 XP_006710851 16 7355 XP_006710850 16 7355 XP_006710849 16 7355 XP_005271124 16 7355 XP_006710848 16 7355 XP_006710847 16 7355 XP_006710846 16 7355 NP_001139669 16 7355 NP_954981 16 7355 NP_001694 16 7355 NP_005912 15 9605 NP_009121 15 9605 NP_001128248 15 9605 NP_001128247 15 9605 NP_663782 15 9605 NP_001096029 15 9605 NP_085076 15 9605 NP_071940 15 9605 NP_001005417 15 9605 NP_065907 15 9605 NP_001118 15 9605 NP_003771 15 9605 XP_005268066 15 9605 XP_005269174 15 9605 XP_006718728 15 9605 XP_005274241 15 9605 XP_005274240 15 9605 XP_005274239 15 9605 XP_005269527 15 9605 XP_005269526 15 9605 XP_005273720 15 9605 XP_005273718 15 9605 XP_005248577 15 9605 XP_005248576 15 9605 XP_006711080 15 9605 XP_005271361 15 9605 NP_001159491 15 9605 NP_073733 15 9605 NP_001096030 15 9605 NP_115872 15 9605>NP_004324 Length = 766 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L LLFVSKF Sbjct: 286 LDLLFVSKF 294>XP_005250103 Length = 758 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L LLFVSKF Sbjct: 286 LDLLFVSKF 294>XP_005250102 Length = 767 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L LLFVSKF Sbjct: 286 LDLLFVSKF 294>NP_000866 Length = 1367 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH+L +SK Sbjct: 59 LHILLISK 66>NP_940912 Length = 1313 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HLLFVSKF 9 HL F+S F Sbjct: 77 HLAFISNF 84>NP_203751 Length = 1143 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LHLLFV Sbjct: 377 LHLLFV 382>NP_001243497 Length = 764 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 575 IHVLHVNKF 583>NP_003612 Length = 876 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 687 IHVLHVNKF 695>NP_001243498 Length = 733 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 544 IHVLHVNKF 552>XP_005254953 Length = 1366 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH+L +SK Sbjct: 59 LHILLISK 66>XP_006720550 Length = 1373 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH+L +SK Sbjct: 66 LHILLISK 73>XP_006720549 Length = 1374 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH+L +SK Sbjct: 66 LHILLISK 73>XP_006718416 Length = 784 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 555 IHVLHVNKF 563>XP_006718415 Length = 839 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 610 IHVLHVNKF 618>XP_006718414 Length = 850 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 621 IHVLHVNKF 629>XP_006718413 Length = 887 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 698 IHVLHVNKF 706>XP_005253234 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 687 IHVLHVNKF 695>XP_006718412 Length = 927 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 698 IHVLHVNKF 706>XP_005253233 Length = 937 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 748 IHVLHVNKF 756>XP_005253232 Length = 948 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 759 IHVLHVNKF 767>XP_005253231 Length = 977 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 +H+L V+KF Sbjct: 748 IHVLHVNKF 756>XP_006714457 Length = 809 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LHLLFV Sbjct: 43 LHLLFV 48>XP_006714456 Length = 1143 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LHLLFV Sbjct: 377 LHLLFV 382>XP_005263376 Length = 1143 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LHLLFV Sbjct: 377 LHLLFV 382>NP_940906 Length = 377 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLFVSKF 9 LLF+SKF Sbjct: 95 LLFLSKF 101>NP_579872 Length = 59 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LHLLF+ + Sbjct: 29 LHLLFLKR 36>NP_001693 Length = 1584 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1018 LHFFFLSSF 1026>XP_005251072 Length = 1586 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1015 LHFFFLSSF 1023>XP_006710853 Length = 1478 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 948 LHFFFLSSF 956>XP_006710852 Length = 1497 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 948 LHFFFLSSF 956>XP_006710851 Length = 1511 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 948 LHFFFLSSF 956>XP_006710850 Length = 1530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 948 LHFFFLSSF 956>XP_006710849 Length = 1530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 948 LHFFFLSSF 956>XP_005271124 Length = 1551 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1003 LHFFFLSSF 1011>XP_006710848 Length = 1552 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1003 LHFFFLSSF 1011>XP_006710847 Length = 1566 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1003 LHFFFLSSF 1011>XP_006710846 Length = 1584 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1003 LHFFFLSSF 1011>NP_001139669 Length = 7081 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LHL+ VSK Sbjct: 541 LHLISVSK 548>NP_954981 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 H+LF+SK Sbjct: 135 HVLFLSK 141>NP_001694 Length = 1585 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 LHLLFVSKF 9 LH F+S F Sbjct: 1003 LHFFFLSSF 1011>NP_005912 Length = 1512 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 +HLLFV Sbjct: 356 IHLLFV 361>NP_009121 Length = 1000 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH LF+S+ Sbjct: 562 LHALFMSR 569>NP_001128248 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>NP_001128247 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>NP_663782 Length = 939 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LH+LFV Sbjct: 824 LHILFV 829>NP_001096029 Length = 264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L L+F++KF Sbjct: 69 LSLIFLAKF 77>NP_085076 Length = 401 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HLLFVSKF 9 HL F S+F Sbjct: 67 HLAFFSRF 74>NP_071940 Length = 938 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LH+LFV Sbjct: 11 LHILFV 16>NP_001005417 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HLLFVSKF 9 HL F S+F Sbjct: 38 HLAFFSRF 45>NP_065907 Length = 1081 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLL+VS+ Sbjct: 1071 HLLYVSE 1077>NP_001118 Length = 949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LH+LFV Sbjct: 831 LHILFV 836>NP_003771 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HLLFVSKF 9 HL F S+F Sbjct: 38 HLAFFSRF 45>XP_005268066 Length = 1172 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LH+LFV Sbjct: 245 LHILFV 250>XP_005269174 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LHLLFVSKF 9 LHL F +KF Sbjct: 220 LHLGFSTKF 228>XP_006718728 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>XP_005274241 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>XP_005274240 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>XP_005274239 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>XP_005269527 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH LF+S+ Sbjct: 515 LHALFMSR 522>XP_005269526 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LHLLFVSK 8 LH LF+S+ Sbjct: 562 LHALFMSR 569>XP_005273720 Length = 161 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L L+F++KF Sbjct: 69 LSLIFLAKF 77>XP_005273718 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L L+F++KF Sbjct: 69 LSLIFLAKF 77>XP_005248577 Length = 1349 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 +HLLFV Sbjct: 193 IHLLFV 198>XP_005248576 Length = 1375 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 +HLLFV Sbjct: 219 IHLLFV 224>XP_006711080 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HLLFVSKF 9 HL F S+F Sbjct: 38 HLAFFSRF 45>XP_005271361 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HLLFVSKF 9 HL F S+F Sbjct: 38 HLAFFSRF 45>NP_001159491 Length = 919 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LHLLFV 6 LH+LFV Sbjct: 804 LHILFV 809>NP_073733 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HLLFVSK 8 HLLF+S+ Sbjct: 136 HLLFMSQ 142>NP_001096030 Length = 176 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L L+F++KF Sbjct: 69 LSLIFLAKF 77>NP_115872 Length = 216 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LHLLFVSKF 9 L L+F++KF Sbjct: 69 LSLIFLAKF 77Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.351 0.159 0.480 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 471,444 Number of extensions: 732 Number of successful extensions: 70 Number of sequences better than 10000.0: 70 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 70 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |