Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 19 869 NP_444254 19 869 NP_444253 19 869 NP_444255 19 869 XP_005247551 19 869 XP_005247550 19 869 XP_006713712 19 869 XP_005247549 19 869 NP_001129242 17 2528 NP_001129241 17 2528 NP_001129240 17 2528 NP_006496 17 2528 NP_037514 17 3301 NP_001073296 16 5631 NP_003728 16 7355 NP_542454 16 7355 NP_065928 16 7355 NP_060910 16 7355 XP_005256527 16 7355 XP_005253264 16 7355 XP_006716525 16 7355 XP_006716524 16 7355 NP_775791 16 7355 NP_150285 15 9605 NP_054777 15 9605 NP_597713 15 9605 NP_001166171 15 9605 XP_006714597 15 9605 XP_005271944 15 9605 XP_005271943 15 9605 XP_006714596 15 9605 XP_005271942 15 9605>NP_444256 Length = 1794 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1247 LGSRQAQV 1254>NP_444254 Length = 1845 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1247 LGSRQAQV 1254>NP_444253 Length = 1914 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1316 LGSRQAQV 1323>NP_444255 Length = 1863 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1316 LGSRQAQV 1323>XP_005247551 Length = 1855 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1257 LGSRQAQV 1264>XP_005247550 Length = 1856 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1326 LGSRQAQV 1333>XP_006713712 Length = 1923 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1326 LGSRQAQV 1333>XP_005247549 Length = 1924 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LGSRQAQV Sbjct: 1326 LGSRQAQV 1333>NP_001129242 Length = 392 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LGSRQAQVT 9 LG+RQA++T Sbjct: 318 LGARQAELT 326>NP_001129241 Length = 364 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LGSRQAQVT 9 LG+RQA++T Sbjct: 318 LGARQAELT 326>NP_001129240 Length = 372 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LGSRQAQVT 9 LG+RQA++T Sbjct: 318 LGARQAELT 326>NP_006496 Length = 417 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LGSRQAQVT 9 LG+RQA++T Sbjct: 318 LGARQAELT 326>NP_037514 Length = 750 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LGSRQAQVT 9 +G+RQ QVT Sbjct: 366 IGARQQQVT 374>NP_001073296 Length = 232 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LGSRQAQVT 9 LG RQ+Q T Sbjct: 76 LGGRQSQFT 84>NP_003728 Length = 3298 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LGSRQAQVT 9 LGS AQVT Sbjct: 2291 LGSEIAQVT 2299>NP_542454 Length = 195 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GSRQAQ 7 GSRQAQ Sbjct: 9 GSRQAQ 14>NP_065928 Length = 4427 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GSRQAQ 7 GSRQAQ Sbjct: 328 GSRQAQ 333>NP_060910 Length = 432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LGSRQAQVT 9 LGS Q Q+T Sbjct: 8 LGSGQMQIT 16>XP_005256527 Length = 4427 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GSRQAQ 7 GSRQAQ Sbjct: 328 GSRQAQ 333>XP_005253264 Length = 3443 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LGSRQAQVT 9 LGS AQVT Sbjct: 2436 LGSEIAQVT 2444>XP_006716525 Length = 432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LGSRQAQVT 9 LGS Q Q+T Sbjct: 8 LGSGQMQIT 16>XP_006716524 Length = 432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LGSRQAQVT 9 LGS Q Q+T Sbjct: 8 LGSGQMQIT 16>NP_775791 Length = 152 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LGSRQAQ 7 LGSRQA+ Sbjct: 50 LGSRQAR 56>NP_150285 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LGSRQAQV 8 LG+R+A+V Sbjct: 334 LGAREAEV 341>NP_054777 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RQAQVT 9 RQAQVT Sbjct: 330 RQAQVT 335>NP_597713 Length = 847 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434>NP_001166171 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434>XP_006714597 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434>XP_005271944 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434>XP_005271943 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434>XP_006714596 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434>XP_005271942 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LGSRQAQVT 9 LG R QVT Sbjct: 426 LGQRTGQVT 434Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.119 0.295 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 397,884 Number of extensions: 422 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |