Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 509 XP_006726167 18 1135 XP_006726072 18 1135 XP_006725979 18 1135 XP_006725887 18 1135 XP_006725770 18 1135 XP_006725556 18 1135 XP_006715213 18 1135 NP_055717 17 3301 XP_005260386 17 3301 NP_443171 17 4312 NP_112572 17 4312 XP_006711210 17 4312 XP_006711209 17 4312 XP_005244929 17 4312 XP_006711208 17 4312 NP_612429 16 5631 NP_001258547 16 5631 NP_060077 16 5631 XP_005259070 16 5631 XP_005267356 16 5631 NP_001137357 16 7355 NP_001137358 16 7355 NP_001231921 16 7355 NP_001231919 16 7355 NP_002471 16 7355 NP_542194 16 7355 NP_002271 16 7355 XP_005268950 16 7355 XP_005268949 16 7355 XP_005268948 16 7355 XP_005268946 16 7355 XP_005268944 16 7355 XP_005268945 16 7355 XP_005268943 16 7355 XP_005268942 16 7355 NP_689488 16 7355>NP_115803 Length = 1156 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LGRQSQRST 9 LG+QSQRST Sbjct: 344 LGQQSQRST 352>XP_006726167 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>XP_006726072 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>XP_006725979 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>XP_006725887 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>XP_006725770 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>XP_006725556 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>XP_006715213 Length = 156 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 +GR SQRST Sbjct: 1 MGRSSQRST 9>NP_055717 Length = 989 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGRQ++RS Sbjct: 230 LGRQAERS 237>XP_005260386 Length = 992 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGRQ++RS Sbjct: 230 LGRQAERS 237>NP_443171 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGR++QRS Sbjct: 331 LGRKTQRS 338>NP_112572 Length = 515 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGR++QRS Sbjct: 332 LGRKTQRS 339>XP_006711210 Length = 485 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGR++QRS Sbjct: 82 LGRKTQRS 89>XP_006711209 Length = 613 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGR++QRS Sbjct: 331 LGRKTQRS 338>XP_005244929 Length = 647 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGR++QRS Sbjct: 244 LGRKTQRS 251>XP_006711208 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LGRQSQRS 8 LGR++QRS Sbjct: 331 LGRKTQRS 338>NP_612429 Length = 5795 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GRQSQR 7 GRQSQR Sbjct: 251 GRQSQR 256>NP_001258547 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 L RQS+RST Sbjct: 551 LMRQSRRST 559>NP_060077 Length = 782 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 L RQS+RST Sbjct: 552 LMRQSRRST 560>XP_005259070 Length = 781 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LGRQSQRST 9 L RQS+RST Sbjct: 552 LMRQSRRST 560>XP_005267356 Length = 5695 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GRQSQR 7 GRQSQR Sbjct: 151 GRQSQR 156>NP_001137357 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>NP_001137358 Length = 943 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 603 RQSRRST 609>NP_001231921 Length = 974 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 634 RQSRRST 640>NP_001231919 Length = 995 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>NP_002471 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>NP_542194 Length = 1661 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GRQSQRS 8 GRQ QRS Sbjct: 1235 GRQMQRS 1241>NP_002271 Length = 455 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LGRQSQRST 9 LGR S R+T Sbjct: 56 LGRSSYRAT 64>XP_005268950 Length = 931 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 575 RQSRRST 581>XP_005268949 Length = 987 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 631 RQSRRST 637>XP_005268948 Length = 990 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 634 RQSRRST 640>XP_005268946 Length = 999 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>XP_005268944 Length = 1005 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>XP_005268945 Length = 1005 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>XP_005268943 Length = 1034 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 678 RQSRRST 684>XP_005268942 Length = 1046 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RQSQRST 9 RQS+RST Sbjct: 690 RQSRRST 696>NP_689488 Length = 665 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LGRQSQRS 8 LGR+ QRS Sbjct: 34 LGRELQRS 41Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.116 0.288 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 401,684 Number of extensions: 555 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |