Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 19 869 NP_000170 19 869 NP_001268422 19 869 NP_001268423 19 869 XP_005264328 19 869 XP_006726469 17 2528 XP_006713516 17 2528 NP_001073291 16 5631 NP_000417 16 5631 NP_001158268 16 5631 NP_065782 16 5631 NP_001229341 16 5631 NP_775742 16 5631 XP_005262360 16 5631 XP_005267039 16 5631 XP_005267038 16 5631 XP_006713019 16 5631 NP_005877 15 9605 XP_006721186 15 9605 XP_005255829 15 9605 XP_006721185 15 9605 XP_006721184 15 9605>NP_001268421 Length = 1230 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 LGASDR MS Sbjct: 1047 LGASDRIMS 1055>NP_000170 Length = 1360 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 LGASDR MS Sbjct: 1177 LGASDRIMS 1185>NP_001268422 Length = 1058 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 LGASDR MS Sbjct: 875 LGASDRIMS 883>NP_001268423 Length = 1058 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 LGASDR MS Sbjct: 875 LGASDRIMS 883>XP_005264328 Length = 1261 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 LGASDR MS Sbjct: 1078 LGASDRIMS 1086>XP_006726469 Length = 175 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 +GA DRT+S Sbjct: 161 VGAEDRTLS 169>XP_006713516 Length = 263 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LGASDRTMS 9 +GA DRT+S Sbjct: 249 VGAEDRTLS 257>NP_001073291 Length = 3118 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 GASDRTMS 9 GAS+RT+S Sbjct: 2861 GASNRTIS 2868>NP_000417 Length = 3122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 GASDRTMS 9 GAS+RT+S Sbjct: 2865 GASNRTIS 2872>NP_001158268 Length = 186 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LGASDRTMS 9 LGA DRT S Sbjct: 168 LGAYDRTHS 176>NP_065782 Length = 719 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LGASDRT 7 LGASDR+ Sbjct: 577 LGASDRS 583>NP_001229341 Length = 701 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LGASDRT 7 LGASDR+ Sbjct: 559 LGASDRS 565>NP_775742 Length = 274 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LGASDRTMS 9 LGA DRT S Sbjct: 256 LGAYDRTHS 264>XP_005262360 Length = 557 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LGASDRTMS 9 LGA DR +S Sbjct: 549 LGAQDRLLS 557>XP_005267039 Length = 3206 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 GASDRTMS 9 GAS+RT+S Sbjct: 2949 GASNRTIS 2956>XP_005267038 Length = 3210 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 GASDRTMS 9 GAS+RT+S Sbjct: 2953 GASNRTIS 2960>XP_006713019 Length = 259 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LGASDRTMS 9 LGA DRT S Sbjct: 241 LGAYDRTHS 249>NP_005877 Length = 655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GASDRTM 8 G+SDRT+ Sbjct: 207 GSSDRTI 213>XP_006721186 Length = 658 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GASDRTM 8 G+SDRT+ Sbjct: 207 GSSDRTI 213>XP_005255829 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GASDRTM 8 G+SDRT+ Sbjct: 207 GSSDRTI 213>XP_006721185 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GASDRTM 8 G+SDRT+ Sbjct: 207 GSSDRTI 213>XP_006721184 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GASDRTM 8 G+SDRT+ Sbjct: 207 GSSDRTI 213Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.118 0.299 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 426,426 Number of extensions: 516 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |