Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001121692 16 5631 NP_001271320 16 5631 NP_001121691 16 5631 NP_055482 16 5631 NP_001121693 16 5631 NP_001271319 16 5631 NP_079184 16 5631 NP_001161413 16 5631 NP_057595 16 5631 XP_005254738 16 5631 XP_005254737 16 5631 XP_005268181 16 5631 XP_005253440 16 5631 NP_922940 16 7355 NP_072092 16 7355 NP_922939 16 7355 NP_001188330 16 7355 NP_922941 16 7355 NP_922938 16 7355 NP_001188331 16 7355 NP_000144 16 7355 XP_006719198 16 7355 XP_005253524 16 7355 XP_001718723 16 7355 NP_663634 15 9605 NP_001269889 15 9605 NP_001269852 15 9605 NP_060260 15 9605 NP_001263190 15 9605 NP_652759 15 9605 NP_570613 15 9605 NP_064506 15 9605 NP_001269888 15 9605 NP_060707 15 9605 NP_277030 15 9605 NP_001161775 15 9605 NP_001161774 15 9605 NP_001161773 15 9605 NP_001161772 15 9605 NP_001161771 15 9605 NP_001157934 15 9605 XP_006717286 15 9605 XP_006717285 15 9605 XP_006717284 15 9605 XP_006717283 15 9605 XP_006717282 15 9605>NP_001121692 Length = 210 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TMSLHSS 9 TMSLH S Sbjct: 32 TMSLHGS 38>NP_001271320 Length = 231 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TMSLHSS 9 TMSLH S Sbjct: 53 TMSLHGS 59>NP_001121691 Length = 296 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TMSLHSS 9 TMSLH S Sbjct: 118 TMSLHGS 124>NP_055482 Length = 290 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TMSLHSS 9 TMSLH S Sbjct: 112 TMSLHGS 118>NP_001121693 Length = 206 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TMSLHSS 9 TMSLH S Sbjct: 28 TMSLHGS 34>NP_001271319 Length = 295 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TMSLHSS 9 TMSLH S Sbjct: 117 TMSLHGS 123>NP_079184 Length = 626 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFTMSLHSS 9 +F+M+LH S Sbjct: 316 IFSMALHPS 324>NP_001161413 Length = 562 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFTMSLHSS 9 +F+M+LH S Sbjct: 252 IFSMALHPS 260>NP_057595 Length = 280 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TMSLHS 8 TMSLHS Sbjct: 19 TMSLHS 24>XP_005254738 Length = 472 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFTMSLHSS 9 +F+M+LH S Sbjct: 316 IFSMALHPS 324>XP_005254737 Length = 562 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFTMSLHSS 9 +F+M+LH S Sbjct: 252 IFSMALHPS 260>XP_005268181 Length = 383 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LFTMSLH 7 LFT SLH Sbjct: 353 LFTTSLH 359>XP_005253440 Length = 247 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TMSLHS 8 TMSLHS Sbjct: 19 TMSLHS 24>NP_922940 Length = 143 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 87 LFSMSLNS 94>NP_072092 Length = 201 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 87 LFSMSLNS 94>NP_922939 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 133 LFSMSLNS 140>NP_001188330 Length = 662 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FTMSLH 7 FT+SLH Sbjct: 431 FTLSLH 436>NP_922941 Length = 168 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 54 LFSMSLNS 61>NP_922938 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 133 LFSMSLNS 140>NP_001188331 Length = 659 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FTMSLH 7 FT+SLH Sbjct: 428 FTLSLH 433>NP_000144 Length = 685 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FTMSLH 7 FT+SLH Sbjct: 454 FTLSLH 459>XP_006719198 Length = 192 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 133 LFSMSLNS 140>XP_005253524 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFTMSLHS 8 LF+MSL+S Sbjct: 133 LFSMSLNS 140>XP_001718723 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 FTMSLHSS 9 FT+++HS+ Sbjct: 1043 FTLTIHST 1050>NP_663634 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FTMSLH 7 FT+SLH Sbjct: 47 FTVSLH 52>NP_001269889 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 L+T+ LH S Sbjct: 934 LYTLGLHLS 942>NP_001269852 Length = 1088 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 533 LFTLEAHS 540>NP_060260 Length = 602 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 531 LFTLEAHS 538>NP_001263190 Length = 591 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 362 LFTLEAHS 369>NP_652759 Length = 1198 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 643 LFTLEAHS 650>NP_570613 Length = 917 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 362 LFTLEAHS 369>NP_064506 Length = 1516 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FTMSLH 7 FT+SLH Sbjct: 1216 FTVSLH 1221>NP_001269888 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 L+T+ LH S Sbjct: 934 LYTLGLHLS 942>NP_060707 Length = 1150 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 L+T+ LH S Sbjct: 949 LYTLGLHLS 957>NP_277030 Length = 655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 +FT + HSS Sbjct: 68 IFTSNTHSS 76>NP_001161775 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 +FT + HSS Sbjct: 26 IFTSNTHSS 34>NP_001161774 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 +FT + HSS Sbjct: 52 IFTSNTHSS 60>NP_001161773 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 +FT + HSS Sbjct: 52 IFTSNTHSS 60>NP_001161772 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 +FT + HSS Sbjct: 62 IFTSNTHSS 70>NP_001161771 Length = 658 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFTMSLHSS 9 +FT + HSS Sbjct: 71 IFTSNTHSS 79>NP_001157934 Length = 5335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TMSLHS 8 TMS+HS Sbjct: 4870 TMSIHS 4875>XP_006717286 Length = 610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 539 LFTLEAHS 546>XP_006717285 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 269 LFTLEAHS 276>XP_006717284 Length = 961 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 406 LFTLEAHS 413>XP_006717283 Length = 1086 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 531 LFTLEAHS 538>XP_006717282 Length = 1094 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LFTMSLHS 8 LFT+ HS Sbjct: 539 LFTLEAHS 546Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.122 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 542,261 Number of extensions: 691 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |