Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005301 18 1135 NP_001229371 18 1135 NP_001025173 18 1135 NP_001229372 18 1135 NP_722523 16 5631 NP_065201 16 5631 NP_647611 16 5631 NP_647612 16 5631 NP_002369 16 5631 XP_005248797 16 5631 XP_005248796 16 5631 XP_005248795 16 5631 XP_005247073 16 5631 NP_066382 16 7355 NP_064710 16 7355 XP_005255493 16 7355 XP_006721128 16 7355 XP_005255492 16 7355 NP_004374 15 9605 NP_001120662 15 9605 NP_056036 15 9605 NP_001253989 15 9605 NP_001226 15 9605 NP_001253990 15 9605 NP_001253988 15 9605 NP_055563 15 9605 NP_001193943 15 9605 NP_940931 15 9605 XP_006721943 15 9605 XP_006721942 15 9605 XP_005254225 15 9605 XP_005254222 15 9605 XP_006718792 15 9605 XP_006718791 15 9605 XP_006718790 15 9605 XP_006717799 15 9605 XP_006717798 15 9605 NP_689666 15 9605>NP_005301 Length = 532 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFLVREVQR 9 LFLVRE QR Sbjct: 454 LFLVRESQR 462>NP_001229371 Length = 555 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFLVREVQR 9 LFLVRE QR Sbjct: 477 LFLVRESQR 485>NP_001025173 Length = 532 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFLVREVQR 9 LFLVRE QR Sbjct: 454 LFLVRESQR 462>NP_001229372 Length = 532 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFLVREVQR 9 LFLVRE QR Sbjct: 454 LFLVRESQR 462>NP_722523 Length = 946 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 F+V E+QR Sbjct: 414 FIVEEIQR 421>NP_065201 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 F+V E+QR Sbjct: 370 FIVEEIQR 377>NP_647611 Length = 466 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LFLVREVQR 9 LFLVRE R Sbjct: 102 LFLVRESAR 110>NP_647612 Length = 507 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LFLVREVQR 9 LFLVRE R Sbjct: 143 LFLVRESAR 151>NP_002369 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LFLVREVQR 9 LFLVRE R Sbjct: 144 LFLVRESAR 152>XP_005248797 Length = 902 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 F+V E+QR Sbjct: 370 FIVEEIQR 377>XP_005248796 Length = 937 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 F+V E+QR Sbjct: 414 FIVEEIQR 421>XP_005248795 Length = 945 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 F+V E+QR Sbjct: 413 FIVEEIQR 420>XP_005247073 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LFLVREVQR 9 LFL RE+ R Sbjct: 667 LFLFREITR 675>NP_066382 Length = 396 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLVREVQR 9 LFL R++QR Sbjct: 241 LFLDRDLQR 249>NP_064710 Length = 1052 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLVREV 7 LFLVRE+ Sbjct: 884 LFLVREL 890>XP_005255493 Length = 959 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLVREV 7 LFLVRE+ Sbjct: 791 LFLVREL 797>XP_006721128 Length = 985 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLVREV 7 LFLVRE+ Sbjct: 817 LFLVREL 823>XP_005255492 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLVREV 7 LFLVRE+ Sbjct: 858 LFLVREL 864>NP_004374 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 103 LFLVRE 108>NP_001120662 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 103 LFLVRE 108>NP_056036 Length = 1577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 FL++ VQR Sbjct: 918 FLIKPVQR 925>NP_001253989 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 137 LFLVRE 142>NP_001226 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFLVREVQ 8 +FLVR+ Q Sbjct: 389 IFLVRDTQ 396>NP_001253990 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 142 LFLVRE 147>NP_001253988 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 150 LFLVRE 155>NP_055563 Length = 470 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 162 LFLVRE 167>NP_001193943 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFLVREVQ 8 +FLVR+ Q Sbjct: 389 IFLVRDTQ 396>NP_940931 Length = 1503 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VREVQR 9 VREVQR Sbjct: 1317 VREVQR 1322>XP_006721943 Length = 1456 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VREVQR 9 VREVQR Sbjct: 1317 VREVQR 1322>XP_006721942 Length = 1503 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VREVQR 9 VREVQR Sbjct: 1317 VREVQR 1322>XP_005254225 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LFLVREVQR 9 LFL REV + Sbjct: 184 LFLEREVSK 192>XP_005254222 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LFLVRE 6 LFLVRE Sbjct: 103 LFLVRE 108>XP_006718792 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFLVREVQ 8 +FLVR+ Q Sbjct: 389 IFLVRDTQ 396>XP_006718791 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFLVREVQ 8 +FLVR+ Q Sbjct: 389 IFLVRDTQ 396>XP_006718790 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFLVREVQ 8 +FLVR+ Q Sbjct: 389 IFLVRDTQ 396>XP_006717799 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 FL++ VQR Sbjct: 918 FLIKPVQR 925>XP_006717798 Length = 1534 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLVREVQR 9 FL++ VQR Sbjct: 918 FLIKPVQR 925>NP_689666 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LFLVREVQR 9 LFL REV + Sbjct: 184 LFLEREVSK 192Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.347 0.158 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 428,967 Number of extensions: 694 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |