Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001240781 17 3301 NP_006585 17 3301 NP_001240782 17 3301 XP_005270439 17 3301 XP_005270438 17 3301 NP_001138767 16 5631 XP_005265374 16 5631 NP_001026 16 7355 XP_005265906 16 7355 XP_006714896 16 7355 XP_006711873 16 7355 XP_006711872 16 7355 XP_006711871 16 7355 XP_006711870 16 7355 XP_006711869 16 7355 XP_006711868 16 7355 XP_006711867 16 7355 XP_006711866 16 7355 XP_006711865 16 7355 NP_079429 16 7355 NP_001006623 15 9605 NP_997293 15 9605>NP_001240781 Length = 739 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LFLI+ K+F Sbjct: 258 LFLILAKMF 266>NP_006585 Length = 739 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LFLI+ K+F Sbjct: 258 LFLILAKMF 266>NP_001240782 Length = 640 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LFLI+ K+F Sbjct: 159 LFLILAKMF 167>XP_005270439 Length = 405 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LFLI+ K+F Sbjct: 258 LFLILAKMF 266>XP_005270438 Length = 635 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LFLI+ K+F Sbjct: 258 LFLILAKMF 266>NP_001138767 Length = 558 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 +FL+ +KLF Sbjct: 546 IFLVPLKLF 554>XP_005265374 Length = 503 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 +FL+ +KLF Sbjct: 491 IFLVPLKLF 499>NP_001026 Length = 4967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1817 LFVPLIKLF 1825>XP_005265906 Length = 1421 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLIMIK 7 LF+IMIK Sbjct: 86 LFVIMIK 92>XP_006714896 Length = 1461 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLIMIK 7 LF+IMIK Sbjct: 126 LFVIMIK 132>XP_006711873 Length = 4954 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1816 LFVPLIKLF 1824>XP_006711872 Length = 2735 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1827 LFVPLIKLF 1835>XP_006711871 Length = 4906 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1827 LFVPLIKLF 1835>XP_006711870 Length = 4965 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1827 LFVPLIKLF 1835>XP_006711869 Length = 4973 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1827 LFVPLIKLF 1835>XP_006711868 Length = 4975 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1817 LFVPLIKLF 1825>XP_006711867 Length = 4977 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1827 LFVPLIKLF 1835>XP_006711866 Length = 4984 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1826 LFVPLIKLF 1834>XP_006711865 Length = 4985 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFLIMIKLF 9 LF+ +IKLF Sbjct: 1827 LFVPLIKLF 1835>NP_079429 Length = 1461 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LFLIMIK 7 LF+IMIK Sbjct: 126 LFVIMIK 132>NP_001006623 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 LIMIKLF 9 ++M+KLF Sbjct: 221 IVMVKLF 227>NP_997293 Length = 394 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFLIMIKL 8 L L+M+KL Sbjct: 366 LLLVMVKL 373Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.371 0.183 0.508 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 284,271 Number of extensions: 321 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |