Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115894 17 2528 XP_005264828 17 2528 NP_114161 17 4312 XP_006713841 17 4312 NP_443142 16 7355 NP_001268432 16 7355 NP_852004 16 7355 NP_001193795 16 7355 NP_000556 16 7355 NP_056271 16 7355 NP_006868 16 7355 NP_001012999 16 7355 NP_001988 16 7355 XP_005245197 16 7355 XP_005245196 16 7355 XP_006711362 16 7355 XP_006711361 16 7355 NP_006653 15 9605 NP_057331 15 9605 NP_671488 15 9605 NP_001186492 15 9605 NP_057445 15 9605 NP_075048 15 9605 NP_009004 15 9605 XP_006725824 15 9605 XP_006713077 15 9605 XP_005264994 15 9605 XP_006711427 15 9605 XP_005277457 15 9605 XP_006711426 15 9605 NP_699162 15 9605 NP_001121686 15 9605>NP_115894 Length = 601 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFIRSTQV 8 LF+R+TQV Sbjct: 536 LFVRATQV 543>XP_005264828 Length = 524 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LFIRSTQV 8 LF+R+TQV Sbjct: 459 LFVRATQV 466>NP_114161 Length = 569 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FIRSTQVH 9 FIRSTQ++ Sbjct: 439 FIRSTQLN 446>XP_006713841 Length = 540 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FIRSTQVH 9 FIRSTQ++ Sbjct: 439 FIRSTQLN 446>NP_443142 Length = 696 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 LF+R ++H Sbjct: 380 LFLRDNKIH 388>NP_001268432 Length = 696 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 LF+R ++H Sbjct: 380 LFLRDNKIH 388>NP_852004 Length = 365 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>NP_001193795 Length = 352 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>NP_000556 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>NP_056271 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 LF+R+ VH Sbjct: 225 LFLRTRNVH 233>NP_006868 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 FIRSTQVH 9 FIR TQ H Sbjct: 333 FIRVTQQH 340>NP_001012999 Length = 967 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FIRSTQVH 9 FIR +++H Sbjct: 479 FIRKSEIH 486>NP_001988 Length = 133 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LFIRSTQVH 9 LF+R+ ++H Sbjct: 3 LFVRAQELH 11>XP_005245197 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>XP_005245196 Length = 360 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>XP_006711362 Length = 381 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>XP_006711361 Length = 484 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +RS Q+H Sbjct: 81 LLLRSVQLH 89>NP_006653 Length = 3230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LFIRSTQVH 9 L +R+T VH Sbjct: 928 LVLRATDVH 936>NP_057331 Length = 1241 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 FIRSTQVH 9 FIR+ Q H Sbjct: 1123 FIRTLQAH 1130>NP_671488 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSTQVH 9 RSTQ+H Sbjct: 205 RSTQMH 210>NP_001186492 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSTQVH 9 RSTQ+H Sbjct: 205 RSTQMH 210>NP_057445 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFIRSTQV 8 +FIRST + Sbjct: 159 VFIRSTNI 166>NP_075048 Length = 1088 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 FIRSTQVH 9 F++ST+ H Sbjct: 392 FVKSTEPH 399>NP_009004 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSTQVH 9 RSTQ+H Sbjct: 205 RSTQMH 210>XP_006725824 Length = 369 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IRSTQVH 9 IR+TQ H Sbjct: 107 IRTTQAH 113>XP_006713077 Length = 237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IRSTQVH 9 IR+T+VH Sbjct: 205 IRNTRVH 211>XP_005264994 Length = 237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IRSTQVH 9 IR+T+VH Sbjct: 205 IRNTRVH 211>XP_006711427 Length = 228 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFIRSTQV 8 +FIRST + Sbjct: 116 VFIRSTNI 123>XP_005277457 Length = 271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFIRSTQV 8 +FIRST + Sbjct: 159 VFIRSTNI 166>XP_006711426 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LFIRSTQV 8 +FIRST + Sbjct: 116 VFIRSTNI 123>NP_699162 Length = 237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IRSTQVH 9 IR+T+VH Sbjct: 205 IRNTRVH 211>NP_001121686 Length = 237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IRSTQVH 9 IR+T+VH Sbjct: 205 IRNTRVH 211Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.142 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 385,481 Number of extensions: 777 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |