Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138390 18 1482 NP_001138386 18 1482 NP_001138387 18 1482 NP_000132 18 1482 NP_075259 18 1482 NP_001138388 18 1482 NP_001138391 18 1482 NP_001138385 18 1482 NP_075418 18 1482 XP_006717776 18 1482 XP_006717775 18 1482 XP_006717774 18 1482 XP_006717773 18 1482 XP_006717772 18 1482 XP_006717771 18 1482 NP_061848 16 7355 NP_787125 16 7355 NP_997304 16 7355 NP_004106 16 7355 NP_001012680 15 9605 NP_001012682 15 9605 NP_002385 15 9605 NP_001013269 15 9605 NP_006112 15 9605>NP_001138390 Length = 704 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 261 LEIAIYCIG 269>NP_001138386 Length = 709 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 264 LEIAIYCIG 272>NP_001138387 Length = 707 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 287 LEIAIYCIG 295>NP_000132 Length = 821 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 376 LEIAIYCIG 384>NP_075259 Length = 822 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 377 LEIAIYCIG 385>NP_001138388 Length = 706 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 261 LEIAIYCIG 269>NP_001138391 Length = 680 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 288 LEIAIYCIG 296>NP_001138385 Length = 769 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 377 LEIAIYCIG 385>NP_075418 Length = 732 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 287 LEIAIYCIG 295>XP_006717776 Length = 806 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 395 LEIAIYCIG 403>XP_006717775 Length = 726 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 281 LEIAIYCIG 289>XP_006717774 Length = 752 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 307 LEIAIYCIG 315>XP_006717773 Length = 807 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 396 LEIAIYCIG 404>XP_006717772 Length = 838 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 395 LEIAIYCIG 403>XP_006717771 Length = 839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEIAIYRIG 9 LEIAIY IG Sbjct: 396 LEIAIYCIG 404>NP_061848 Length = 399 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LEIAIYRIG 9 LE+ YR+G Sbjct: 94 LELEAYRLG 102>NP_787125 Length = 252 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LEIAIYR 7 LE+A+YR Sbjct: 206 LEVAMYR 212>NP_997304 Length = 694 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LEIAIYRIG 9 LE+ IYR G Sbjct: 126 LEVDIYRNG 134>NP_004106 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LEIAIYR 7 LE+A+YR Sbjct: 201 LEVAMYR 207>NP_001012680 Length = 631 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYRIG 9 A+YRIG Sbjct: 224 ALYRIG 229>NP_001012682 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYRIG 9 A+YRIG Sbjct: 161 ALYRIG 166>NP_002385 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYRIG 9 A+YRIG Sbjct: 223 ALYRIG 228>NP_001013269 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYRIG 9 A+YRIG Sbjct: 122 ALYRIG 127>NP_006112 Length = 644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LEIAIYR 7 LEIA YR Sbjct: 477 LEIATYR 483Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.161 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 373,420 Number of extensions: 436 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |