Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 19 665 NP_000170 19 665 NP_001268422 19 665 NP_001268423 19 665 XP_005264328 19 665 NP_060116 18 1935 XP_006710769 18 1935 XP_005271011 18 1935 NP_115984 17 2528 NP_690007 17 3301 NP_690008 17 3301 NP_071907 17 3301 XP_005259213 17 3301 XP_005259212 17 3301 XP_005259211 17 3301 XP_006723388 17 3301 XP_005259210 17 3301 XP_006723387 17 3301 XP_005259209 17 3301 NP_690009 17 3301 NP_003244 17 4312 XP_005261096 17 4312 XP_005261095 17 4312 XP_005261094 17 4312 NP_005436 16 7355 NP_056125 16 7355 XP_006726589 16 7355 XP_006718462 16 7355 XP_005273518 16 7355 XP_006716381 16 7355 XP_006710010 16 7355 NP_001005207 15 9605 NP_056109 15 9605 NP_001258540 15 9605 NP_001258539 15 9605 NP_003756 15 9605 NP_060439 15 9605 NP_001075 15 9605 NP_001258538 15 9605 XP_005257447 15 9605 XP_005257446 15 9605 XP_005257445 15 9605 XP_005257444 15 9605 XP_005257443 15 9605 XP_005257442 15 9605 XP_006712689 15 9605 XP_005263764 15 9605>NP_001268421 Length = 1230 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 LDSD VSTT Sbjct: 582 LDSDTVSTT 590>NP_000170 Length = 1360 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 LDSD VSTT Sbjct: 712 LDSDTVSTT 720>NP_001268422 Length = 1058 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 LDSD VSTT Sbjct: 410 LDSDTVSTT 418>NP_001268423 Length = 1058 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 LDSD VSTT Sbjct: 410 LDSDTVSTT 418>XP_005264328 Length = 1261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 LDSD VSTT Sbjct: 613 LDSDTVSTT 621>NP_060116 Length = 467 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LDSDAVST 8 LDSDAV+T Sbjct: 429 LDSDAVNT 436>XP_006710769 Length = 326 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LDSDAVST 8 LDSDAV+T Sbjct: 288 LDSDAVNT 295>XP_005271011 Length = 386 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LDSDAVST 8 LDSDAV+T Sbjct: 348 LDSDAVNT 355>NP_115984 Length = 817 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 LD+DAVS T Sbjct: 199 LDADAVSPT 207>NP_690007 Length = 667 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 279 LDSDAVS 285>NP_690008 Length = 669 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 281 LDSDAVS 287>NP_071907 Length = 600 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 212 LDSDAVS 218>XP_005259213 Length = 587 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 325 LDSDAVS 331>XP_005259212 Length = 587 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 325 LDSDAVS 331>XP_005259211 Length = 600 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 212 LDSDAVS 218>XP_006723388 Length = 600 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 212 LDSDAVS 218>XP_005259210 Length = 612 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 230 LDSDAVS 236>XP_006723387 Length = 667 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 279 LDSDAVS 285>XP_005259209 Length = 713 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 325 LDSDAVS 331>NP_690009 Length = 450 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDSDAVS 7 LDSDAVS Sbjct: 212 LDSDAVS 218>NP_003244 Length = 1591 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 +DSDAVS + Sbjct: 1457 IDSDAVSAS 1465>XP_005261096 Length = 1591 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 +DSDAVS + Sbjct: 1457 IDSDAVSAS 1465>XP_005261095 Length = 1591 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 +DSDAVS + Sbjct: 1457 IDSDAVSAS 1465>XP_005261094 Length = 1591 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDSDAVSTT 9 +DSDAVS + Sbjct: 1457 IDSDAVSAS 1465>NP_005436 Length = 1217 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDSDAVST 8 +DSD VST Sbjct: 563 VDSDEVST 570>NP_056125 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDSDAVST 8 LD DAVS+ Sbjct: 156 LDQDAVSS 163>XP_006726589 Length = 931 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 +DSD STT Sbjct: 109 VDSDCPSTT 117>XP_006718462 Length = 4966 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 +DSD STT Sbjct: 4134 VDSDCPSTT 4142>XP_005273518 Length = 732 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDSDAVST 8 LD DAVS+ Sbjct: 156 LDQDAVSS 163>XP_006716381 Length = 1014 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDSDAVST 8 LD DAVS+ Sbjct: 123 LDQDAVSS 130>XP_006710010 Length = 1103 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 +DSD STT Sbjct: 330 VDSDCPSTT 338>NP_001005207 Length = 964 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 833 LDSDAV 838>NP_056109 Length = 964 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 833 LDSDAV 838>NP_001258540 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 LD+ AVS T Sbjct: 88 LDASAVSAT 96>NP_001258539 Length = 246 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 LD+ AVS T Sbjct: 137 LDASAVSAT 145>NP_003756 Length = 249 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 LD+ AVS T Sbjct: 137 LDASAVSAT 145>NP_060439 Length = 819 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 DSDAVS 7 DSDAVS Sbjct: 421 DSDAVS 426>NP_001075 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDSDAVST 8 LD+DAV T Sbjct: 391 LDADAVLT 398>NP_001258538 Length = 220 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDSDAVSTT 9 LD+ AVS T Sbjct: 137 LDASAVSAT 145>XP_005257447 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 833 LDSDAV 838>XP_005257446 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 833 LDSDAV 838>XP_005257445 Length = 930 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 790 LDSDAV 795>XP_005257444 Length = 930 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 799 LDSDAV 804>XP_005257443 Length = 939 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 799 LDSDAV 804>XP_005257442 Length = 973 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LDSDAV 6 LDSDAV Sbjct: 833 LDSDAV 838>XP_006712689 Length = 823 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 DSDAVS 7 DSDAVS Sbjct: 426 DSDAVS 431>XP_005263764 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 DSDAVS 7 DSDAVS Sbjct: 426 DSDAVS 431Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.108 0.256 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 407,070 Number of extensions: 534 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |