Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1135 NP_001075109 18 1135 NP_001091984 17 2528 NP_689672 17 2528 XP_005255200 17 2528 NP_001278261 17 3301 NP_001034553 17 3301 NP_699167 17 3301 XP_005269553 17 3301 NP_004749 17 4312 NP_077729 17 4312 NP_001248764 17 4312 XP_006722241 17 4312 XP_006722240 17 4312 XP_006722239 17 4312 XP_006722238 17 4312 XP_005257864 17 4312 XP_006722237 17 4312 XP_006722236 17 4312 NP_665736 16 5631 NP_005255 16 5631 NP_001138925 16 5631 XP_005269753 16 5631 NP_062545 16 5631 NP_938406 16 7355 NP_938191 16 7355 NP_061496 16 7355 NP_938197 16 7355 NP_060888 15 9605 NP_001035518 15 9605 NP_079170 15 9605 NP_001263629 15 9605 NP_612202 15 9605 NP_001248321 15 9605 NP_835235 15 9605 XP_005267912 15 9605 XP_005267911 15 9605 XP_005267909 15 9605 XP_005267908 15 9605>NP_008835 Length = 4128 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LDLLLSALE 9 LDLLL+ALE Sbjct: 1257 LDLLLAALE 1265>NP_001075109 Length = 4097 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LDLLLSALE 9 LDLLL+ALE Sbjct: 1257 LDLLLAALE 1265>NP_001091984 Length = 361 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DL+LSALE Sbjct: 37 DLILSALE 44>NP_689672 Length = 402 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DL+LSALE Sbjct: 37 DLILSALE 44>XP_005255200 Length = 363 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DL+LSALE Sbjct: 75 DLILSALE 82>NP_001278261 Length = 841 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DLLL+ALE Sbjct: 214 DLLLAALE 221>NP_001034553 Length = 1323 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DLLL+ALE Sbjct: 696 DLLLAALE 703>NP_699167 Length = 348 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DLLL+ALE Sbjct: 241 DLLLTALE 248>XP_005269553 Length = 358 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 DLLL+ALE Sbjct: 241 DLLLTALE 248>NP_004749 Length = 1857 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 532 LDLLTSALD 540>NP_077729 Length = 1797 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 472 LDLLTSALD 480>NP_001248764 Length = 1848 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 532 LDLLTSALD 540>XP_006722241 Length = 1467 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 92 LDLLTSALD 100>XP_006722240 Length = 1467 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 92 LDLLTSALD 100>XP_006722239 Length = 1630 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 532 LDLLTSALD 540>XP_006722238 Length = 1847 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 472 LDLLTSALD 480>XP_005257864 Length = 1898 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 532 LDLLTSALD 540>XP_006722237 Length = 1900 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 525 LDLLTSALD 533>XP_006722236 Length = 1907 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LDLLLSALE 9 LDLL SAL+ Sbjct: 532 LDLLTSALD 540>NP_665736 Length = 460 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LDLLLSA Sbjct: 13 LDLLLSA 19>NP_005255 Length = 465 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LDLLLSA Sbjct: 13 LDLLLSA 19>NP_001138925 Length = 460 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LDLLLSA Sbjct: 13 LDLLLSA 19>XP_005269753 Length = 465 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LDLLLSA Sbjct: 13 LDLLLSA 19>NP_062545 Length = 299 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LDLLLSAL 8 LDLLLS L Sbjct: 44 LDLLLSCL 51>NP_938406 Length = 2343 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LLLSALE 9 LLLSALE Sbjct: 1978 LLLSALE 1984>NP_938191 Length = 2366 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LLLSALE 9 LLLSALE Sbjct: 2001 LLLSALE 2007>NP_061496 Length = 2377 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LLLSALE 9 LLLSALE Sbjct: 2012 LLLSALE 2018>NP_938197 Length = 2306 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LLLSALE 9 LLLSALE Sbjct: 1941 LLLSALE 1947>NP_060888 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 471 LDMLLSA 477>NP_001035518 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 439 LDMLLSA 445>NP_079170 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LDL+LSA Sbjct: 284 LDLILSA 290>NP_001263629 Length = 891 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 +LLL+ALE Sbjct: 20 ELLLAALE 27>NP_612202 Length = 892 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DLLLSALE 9 +LLL+ALE Sbjct: 20 ELLLAALE 27>NP_001248321 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LDL+LSA Sbjct: 258 LDLILSA 264>NP_835235 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 285 LDILLSA 291>XP_005267912 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 408 LDMLLSA 414>XP_005267911 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 408 LDMLLSA 414>XP_005267909 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 440 LDMLLSA 446>XP_005267908 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LDLLLSA 7 LD+LLSA Sbjct: 472 LDMLLSA 478Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.145 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 342,803 Number of extensions: 448 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |