Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 18 1482 NP_001277131 18 1482 NP_849191 18 1482 NP_001092105 18 1482 NP_065916 17 4312 NP_001107869 17 4312 NP_001229759 16 7355 NP_068586 16 7355 NP_001229757 16 7355 NP_062548 16 7355 NP_001348 16 7355 NP_001136069 16 7355 XP_006718488 16 7355 XP_005249324 16 7355 XP_005249323 16 7355 NP_006822 16 7355 NP_612480 16 7355 NP_001026 15 9605 NP_976041 15 9605 NP_976042 15 9605 NP_976040 15 9605 NP_976038 15 9605 NP_976039 15 9605 NP_001258 15 9605 XP_006726201 15 9605 XP_006714986 15 9605 XP_006711873 15 9605 XP_006711872 15 9605 XP_006711871 15 9605 XP_006711870 15 9605 XP_006711869 15 9605 XP_006711868 15 9605 XP_006711867 15 9605 XP_006711866 15 9605 XP_006711865 15 9605>NP_115803 Length = 1156 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LDIK IRVG Sbjct: 201 LDIKRIRVG 209>NP_001277131 Length = 869 Score = 18.1 bits (35), Expect = 1482 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LDIKIIRVG 9 LDI+++R+G Sbjct: 508 LDIRVLRIG 516>NP_849191 Length = 994 Score = 18.1 bits (35), Expect = 1482 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LDIKIIRVG 9 LDI+++R+G Sbjct: 633 LDIRVLRIG 641>NP_001092105 Length = 993 Score = 18.1 bits (35), Expect = 1482 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LDIKIIRVG 9 LDI+++R+G Sbjct: 633 LDIRVLRIG 641>NP_065916 Length = 1008 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 L IKI+R+G Sbjct: 641 LQIKILRLG 649>NP_001107869 Length = 994 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 L IKI+R+G Sbjct: 627 LQIKILRLG 635>NP_001229759 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DIKIIRV 8 D+KIIRV Sbjct: 106 DMKIIRV 112>NP_068586 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DIKIIRV 8 D+KIIRV Sbjct: 106 DMKIIRV 112>NP_001229757 Length = 326 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DIKIIRV 8 D+KIIRV Sbjct: 133 DMKIIRV 139>NP_062548 Length = 455 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K++ +G Sbjct: 354 LDLKVVSLG 362>NP_001348 Length = 1270 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 L IK++R+G Sbjct: 803 LSIKLLRLG 811>NP_001136069 Length = 361 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DIKIIRVG 9 D+KI +VG Sbjct: 259 DVKIYKVG 266>XP_006718488 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DIKIIRVG 9 D+KI +VG Sbjct: 323 DVKIYKVG 330>XP_005249324 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DIKIIRV 8 D+KIIRV Sbjct: 106 DMKIIRV 112>XP_005249323 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DIKIIRV 8 D+KIIRV Sbjct: 106 DMKIIRV 112>NP_006822 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DIKIIRVG 9 D+KI +VG Sbjct: 323 DVKIYKVG 330>NP_612480 Length = 381 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LDIKIIRV 8 LD+++IRV Sbjct: 321 LDLQVIRV 328>NP_001026 Length = 4967 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>NP_976041 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K +R+G Sbjct: 151 LDLKGVRLG 159>NP_976042 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K +R+G Sbjct: 177 LDLKGVRLG 185>NP_976040 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K +R+G Sbjct: 151 LDLKGVRLG 159>NP_976038 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K +R+G Sbjct: 359 LDLKGVRLG 367>NP_976039 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K +R+G Sbjct: 151 LDLKGVRLG 159>NP_001258 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 DIKIIRVG 9 DI+++R G Sbjct: 110 DIRVLRAG 117>XP_006726201 Length = 245 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K++ +G Sbjct: 144 LDLKVVGLG 152>XP_006714986 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 LD+K +R+G Sbjct: 151 LDLKGVRLG 159>XP_006711873 Length = 4954 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711872 Length = 2735 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711871 Length = 4906 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711870 Length = 4965 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711869 Length = 4973 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711868 Length = 4975 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711867 Length = 4977 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711866 Length = 4984 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385>XP_006711865 Length = 4985 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LDIKIIRVG 9 +D+K +R+G Sbjct: 377 VDVKSVRMG 385Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.167 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 405,217 Number of extensions: 619 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |