Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 20 509 NP_066124 20 509 XP_006717999 20 509 NP_001707 17 3301 NP_116743 17 3301 NP_001186948 17 3301 NP_057209 17 3301 NP_872588 17 3301 NP_000904 17 3301 XP_006723863 17 3301 XP_005260263 17 3301 XP_006723862 17 3301 NP_001107033 17 4312 NP_001027004 17 4312 NP_543155 17 4312 XP_005262140 17 4312 XP_006714654 17 4312 XP_006714653 17 4312 XP_006714652 17 4312 NP_001274143 16 5631 NP_001274145 16 5631 NP_001625 16 5631 NP_001274144 16 5631 NP_066919 16 5631 NP_001003406 16 5631 XP_006724411 16 5631 NP_000827 16 5631 NP_001268718 16 7355 NP_694993 16 7355 NP_001265482 16 7355 NP_009077 16 7355 NP_955453 16 7355 NP_000826 16 7355 XP_005257701 16 7355 XP_005257700 16 7355 XP_006721911 16 7355 XP_006721910 16 7355 XP_006721909 16 7355 XP_006721908 16 7355 NP_543143 16 7355 NP_002973 15 9605 NP_006210 15 9605 NP_061956 15 9605 XP_005247589 15 9605 XP_006713722 15 9605 XP_005247588 15 9605 XP_005247587 15 9605 XP_005271002 15 9605>NP_065681 Length = 1072 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LCRTVIAA Sbjct: 633 LCRTVIAA 640>NP_066124 Length = 1114 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LCRTVIAA Sbjct: 633 LCRTVIAA 640>XP_006717999 Length = 1207 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LCRTVIAA Sbjct: 726 LCRTVIAA 733>NP_001707 Length = 372 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 121 LCKTVIA 127>NP_116743 Length = 327 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 76 LCKTVIA 82>NP_001186948 Length = 370 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 122 LCKTVIA 128>NP_057209 Length = 435 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LCRTVI+ Sbjct: 411 LCRTVIS 417>NP_872588 Length = 370 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 122 LCKTVIA 128>NP_000904 Length = 370 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 122 LCKTVIA 128>XP_006723863 Length = 289 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 41 LCKTVIA 47>XP_005260263 Length = 365 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 117 LCKTVIA 123>XP_006723862 Length = 370 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+TVIA Sbjct: 122 LCKTVIA 128>NP_001107033 Length = 592 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LCRT+I+ Sbjct: 472 LCRTIIS 478>NP_001027004 Length = 278 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 CRTVIAAT 9 CRT+++ T Sbjct: 197 CRTIVSCT 204>NP_543155 Length = 277 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 CRTVIAAT 9 CRT+++ T Sbjct: 197 CRTIVSCT 204>XP_005262140 Length = 277 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 CRTVIAAT 9 CRT+++ T Sbjct: 197 CRTIVSCT 204>XP_006714654 Length = 537 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LCRT+I+ Sbjct: 472 LCRTIIS 478>XP_006714653 Length = 592 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LCRT+I+ Sbjct: 472 LCRTIIS 478>XP_006714652 Length = 592 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LCRT+I+ Sbjct: 472 LCRTIIS 478>NP_001274143 Length = 305 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 CRTVIAA 8 CRTV+A+ Sbjct: 263 CRTVLAS 269>NP_001274145 Length = 214 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 CRTVIAA 8 CRTV+A+ Sbjct: 172 CRTVLAS 178>NP_001625 Length = 334 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 CRTVIAA 8 CRTV+A+ Sbjct: 292 CRTVLAS 298>NP_001274144 Length = 265 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 CRTVIAA 8 CRTV+A+ Sbjct: 223 CRTVLAS 229>NP_066919 Length = 2223 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+T+IA Sbjct: 1162 LCQTIIA 1168>NP_001003406 Length = 2188 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+T+IA Sbjct: 1127 LCQTIIA 1133>XP_006724411 Length = 1528 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCRTVIA 7 LC+T+IA Sbjct: 467 LCQTIIA 473>NP_000827 Length = 1336 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 592 MCLTVVAVT 600>NP_001268718 Length = 125 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRTVIA 7 CRTV+A Sbjct: 99 CRTVLA 104>NP_694993 Length = 142 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRTVIA 7 CRTV+A Sbjct: 116 CRTVLA 121>NP_001265482 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 562 MCLTVVAIT 570>NP_009077 Length = 521 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 LC+T AAT Sbjct: 384 LCQTSTAAT 392>NP_955453 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LCRTVI 6 +CRTVI Sbjct: 392 ICRTVI 397>NP_000826 Length = 1233 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 562 MCLTVVAIT 570>XP_005257701 Length = 518 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 LC+T AAT Sbjct: 381 LCQTSTAAT 389>XP_005257700 Length = 527 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 LC+T AAT Sbjct: 390 LCQTSTAAT 398>XP_006721911 Length = 1297 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 626 MCLTVVAIT 634>XP_006721910 Length = 1306 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 637 MCLTVVAIT 645>XP_006721909 Length = 1307 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 636 MCLTVVAIT 644>XP_006721908 Length = 1308 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 +C TV+A T Sbjct: 637 MCLTVVAIT 645>NP_543143 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LCRTVI 6 +CRTVI Sbjct: 392 ICRTVI 397>NP_002973 Length = 99 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LCRTVIAAT 9 LC +IAAT Sbjct: 8 LCLLLIAAT 16>NP_006210 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LC+T++++ Sbjct: 364 LCKTIVSS 371>NP_061956 Length = 481 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 CRTVIAA 8 CR V+AA Sbjct: 30 CRMVVAA 36>XP_005247589 Length = 1053 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LC+T++++ Sbjct: 364 LCKTIVSS 371>XP_006713722 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LC+T++++ Sbjct: 364 LCKTIVSS 371>XP_005247588 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LC+T++++ Sbjct: 364 LCKTIVSS 371>XP_005247587 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 1 LCRTVIAA 8 LC+T++++ Sbjct: 364 LCKTIVSS 371>XP_005271002 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 CRTVIAA 8 CR V+AA Sbjct: 30 CRMVVAA 36Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.133 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 420,340 Number of extensions: 394 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |