Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 20 390 NP_848566 18 1935 NP_001119580 16 5631 NP_000330 16 5631 NP_001119579 16 5631 XP_005256176 16 5631 NP_006022 16 7355 NP_000951 16 7355 NP_055030 16 7355 XP_005261186 16 7355 XP_005261185 16 7355 XP_005261184 16 7355 XP_005261183 16 7355 XP_005261182 16 7355 XP_005261181 16 7355 XP_005259152 16 7355 XP_005259150 16 7355 NP_068567 16 7355 NP_001121121 15 9605 NP_060399 15 9605 NP_056207 15 9605 NP_054828 15 9605 NP_078788 15 9605 NP_005348 15 9605 XP_005258998 15 9605 XP_006723281 15 9605 XP_005258997 15 9605 XP_005258996 15 9605 XP_005258995 15 9605 XP_005258994 15 9605 XP_006719412 15 9605 NP_683762 15 9605>NP_005350 Length = 552 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 LCILRM FV Sbjct: 498 LCILRMSFV 506>NP_848566 Length = 335 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC LRM FV Sbjct: 77 LCSLRMAFV 85>NP_001119580 Length = 1021 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LCILRMR 7 +C++RMR Sbjct: 771 VCVMRMR 777>NP_000330 Length = 1030 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LCILRMR 7 +C++RMR Sbjct: 771 VCVMRMR 777>NP_001119579 Length = 1029 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LCILRMR 7 +C++RMR Sbjct: 770 VCVMRMR 776>XP_005256176 Length = 1020 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LCILRMR 7 +C++RMR Sbjct: 770 VCVMRMR 776>NP_006022 Length = 3336 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3204 IAILRLRFL 3212>NP_000951 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 CILRMRF 8 C LRMR+ Sbjct: 170 CFLRMRW 176>NP_055030 Length = 1297 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 LCILRMRF 8 LC+ R+R+ Sbjct: 863 LCVSRLRY 870>XP_005261186 Length = 3139 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3007 IAILRLRFL 3015>XP_005261185 Length = 3229 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3097 IAILRLRFL 3105>XP_005261184 Length = 3258 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3215 IAILRLRFL 3223>XP_005261183 Length = 3268 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3136 IAILRLRFL 3144>XP_005261182 Length = 3346 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3214 IAILRLRFL 3222>XP_005261181 Length = 3347 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCILRMRFV 9 + ILR+RF+ Sbjct: 3215 IAILRLRFL 3223>XP_005259152 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 CILRMRF 8 C LRMR+ Sbjct: 170 CFLRMRW 176>XP_005259150 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 CILRMRF 8 C LRMR+ Sbjct: 170 CFLRMRW 176>NP_068567 Length = 405 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 +C L +RFV Sbjct: 388 VCFLLLRFV 396>NP_001121121 Length = 305 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCILRMRF 8 LC+L +RF Sbjct: 262 LCLLVVRF 269>NP_060399 Length = 305 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCILRMRF 8 LC+L +RF Sbjct: 262 LCLLVVRF 269>NP_056207 Length = 325 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LCILRMR 7 LC+ RMR Sbjct: 77 LCVPRMR 83>NP_054828 Length = 1390 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 LCILRM 6 +C+LRM Sbjct: 1291 MCVLRM 1296>NP_078788 Length = 371 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 LCILRM 6 +C+LRM Sbjct: 231 ICVLRM 236>NP_005348 Length = 1076 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 1042 LCVERIRLV 1050>XP_005258998 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 741 LCVERIRLV 749>XP_006723281 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 741 LCVERIRLV 749>XP_005258997 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 741 LCVERIRLV 749>XP_005258996 Length = 786 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 752 LCVERIRLV 760>XP_005258995 Length = 821 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 787 LCVERIRLV 795>XP_005258994 Length = 1000 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCILRMRFV 9 LC+ R+R V Sbjct: 966 LCVERIRLV 974>XP_006719412 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 7/8 (87%) Query: 2 CILRMRFV 9 C++R +F+ Sbjct: 704 CVVRTKFI 711>NP_683762 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LCILRMR 7 +C+LR+R Sbjct: 29 VCVLRVR 35Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.369 0.167 0.577 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 453,793 Number of extensions: 549 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |